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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454322 (47 seq.)
>W1711334236
MBQE01000001
Alphaproteobacteria
Stappia indica [MBQE]
598859
598784
-
Val
TAC
[ENA]
¡û
>W1711334282
MBQF01000001
Alphaproteobacteria
Stappia indica [MBQF]
590673
590598
-
Val
TAC
[ENA]
¡û
>W1711350372
MCRJ01000025
Alphaproteobacteria
Methylobrevis pamukkalensis [MCRJ]
34059
34134
+
Val
TAC
[ENA]
¡û
>W1711384704
MEDI01000347
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
18597
18522
-
Val
TAC
[ENA]
¡û
>W131162118
AQYH01000020
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
145423
145498
+
Val
TAC
[ENA]
¡û
>W131181116
ARNQ01000040
Alphaproteobacteria
Pannonibacter phragmitetus DSM 14782 [ARNQ]
54844
54769
-
Val
TAC
[ENA]
¡û
>W131224286
AUCR01000001
Alphaproteobacteria
Cucumibacter marinus DSM 18995 [AUCR]
285473
285398
-
Val
TAC
[ENA]
¡û
>W131230383
AUHO01000006
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
44038
44113
+
Val
TAC
[ENA]
¡û
>W131231502
AUIM01000004
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
796161
796086
-
Val
TAC
[ENA]
¡û
>w018783
AATP01000008
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
115880
115808
-
Val
TAC
[ENA]
¡û
>w012838
AAMU01000003
Alphaproteobacteria
Parvularcula bermudensis HTCC2503 [AAMU]
537326
537254
-
Val
TAC
[ENA]
¡û
>WENV180294197
OBIY01033942
[OBIY] beach sand metagenome; beach sand
357
432
+
Val
TAC
[ENA]
¢þ
>WENV170405825
CEUG01199566
[CEUG] marine metagenome genome assembly TARA_128_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
141
216
+
Val
TAC
[ENA]
¢þ
>WENV170894613
MDTD01068217
[MDTD] marine metagenome; seawater
4574
4649
+
Val
TAC
[ENA]
¢þ
>WENV170900567
MDTD01156203
[MDTD] marine metagenome; seawater
201
126
-
Val
TAC
[ENA]
¢þ
>WENV170930891
MDTG01175255
[MDTG] marine metagenome; seawater
201
126
-
Val
TAC
[ENA]
¢þ
>C181227365
LT960614
Alphaproteobacteria
Hartmannibacter diazotrophicus type strain: E19 [LT960614]
2175115
2175190
+
Val
TAC
-
¡û
>C191081627
CP031841
Alphaproteobacteria
Breoghania sp. L-A4 [CP031841]
2892033
2891958
-
Val
TAC
-
¡û
>C191087702
CP032312
Alphaproteobacteria
Pannonibacter phragmitetus BB [CP032312]
2820519
2820444
-
Val
TAC
-
¡û
>W1910501484
FYAN01000026
Alphaproteobacteria
Pannonibacter sp. I15F10I1 [FYAN]
106759
106834
+
Val
TAC
[ENA]
¡û
>W1910501540
FYAO01000027
Alphaproteobacteria
Pannonibacter sp. P2PFMT1 [FYAO]
1407732
1407657
-
Val
TAC
[ENA]
¡û
>W1910501582
FYAP01000031
Alphaproteobacteria
Pannonibacter sp. CS1GBFMT1 [FYAP]
108658
108733
+
Val
TAC
[ENA]
¡û
>W1910501622
FYAQ01000026
Alphaproteobacteria
Pannonibacter sp. TSB10GB1 [FYAQ]
108658
108733
+
Val
TAC
[ENA]
¡û
>W1910501823
FYAU01000035
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
125366
125441
+
Val
TAC
[ENA]
¡û
>W1910501855
FYAV01000042
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
56488
56563
+
Val
TAC
[ENA]
¡û
>W1910501912
FYAW01000021
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
9543
9468
-
Val
TAC
[ENA]
¡û
>W1911494902
OBML01000013
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
83434
83359
-
Val
TAC
[ENA]
¡û
>W1911767353
QXER01000004
Alphaproteobacteria
Pannonibacter phragmitetus 954 [QXER]
771301
771226
-
Val
TAC
[ENA]
¡û
>W1911767395
QXES01000003
Alphaproteobacteria
Pannonibacter phragmitetus H1-4 [QXES]
1793942
1793867
-
Val
TAC
[ENA]
¡û
>W1810273158
PSNV01000003
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
152482
152407
-
Val
TAC
[ENA]
¡û
>W1810324334
PUDR01000006
Alphaproteobacteria
Pannonibacter carbonis Q4.6 [PUDR]
188292
188217
-
Val
TAC
[ENA]
¡û
>W1810487010
QAYG01000004
Alphaproteobacteria
Breoghania corrubedonensis DSM 23382 [QAYG]
339599
339524
-
Val
TAC
[ENA]
¡û
>W1810889057
QURL01000001
Alphaproteobacteria
Fulvimarina endophytica 85 [QURL]
168261
168186
-
Val
TAC
[ENA]
¡û
>C10110137
CP002156
Alphaproteobacteria
Parvularcula bermudensis HTCC2503 [CP002156]
2709280
2709205
-
Val
TAC
[Ensembl]
¡û
>W1510741244
CYHE01000011
Alphaproteobacteria
Pannonibacter indicus DSM 23407 [CYHE]
1377
1302
-
Val
TAC
[ENA]
¡û
>C11117262
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
2181865
2181940
+
Val
TAC
[Ensembl]
¡û
>W11135844
AEFL01000042
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
24246
24321
+
Val
TAC
[ENA]
¡û
>W1511705855
LGSQ01000007
Alphaproteobacteria
Pannonibacter phragmitetus CGMCC9175 [LGSQ]
81888
81963
+
Val
TAC
[ENA]
¡û
>C161050777
CP013068
Alphaproteobacteria
Pannonibacter phragmitetus 31801 [CP013068]
3814322
3814397
+
Val
TAC
[Ensembl]
¡û
>W1610056814
BBWO01000005
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
265476
265401
-
Val
TAC
[ENA]
¡û
>W1610632339
LIPT01000011
Alphaproteobacteria
Pannonibacter indicus [LIPT]
1377
1302
-
Val
TAC
[ENA]
¡û
>W1611066203
MBQE01000001
Alphaproteobacteria
Stappia indica [MBQE]
598859
598784
-
Val
TAC
[ENA]
¡û
>W1611066249
MBQF01000001
Alphaproteobacteria
Stappia indica [MBQF]
590673
590598
-
Val
TAC
[ENA]
¡û
>W1710053513
BBWO01000005
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
265476
265401
-
Val
TAC
[ENA]
¡û
>W1710583181
FQUP01000001
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
206346
206271
-
Val
TAC
[ENA]
¡û
>W1710601590
FUXL01000001
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
285285
285210
-
Val
TAC
[ENA]
¡û
>W1710766725
LIPT01000011
Alphaproteobacteria
Pannonibacter indicus [LIPT]
1377
1302
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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