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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454347 (32 seq.)
>W1710861682
LMDU01000014
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
239541
239616
+
His
GTG
[ENA]
¡û
>W1710866068
LMHE01000013
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
384731
384806
+
His
GTG
[ENA]
¡û
>W1710867089
LMHZ01000023
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
263502
263427
-
His
GTG
[ENA]
¡û
>C171035772
CP015118
Betaproteobacteria
Piscinibacter gummiphilus NS21 [CP015118]
3685590
3685515
-
His
GTG
-
¡û
>WENV180285336
OBID01340126
[OBID] metagenome; sludge
56
131
+
His
GTG
[ENA]
¢þ
>WENV181223020
OFDC01001218
[OFDC] hot springs metagenome; Water
14170
14245
+
His
GTG
[ENA]
¢þ
>WENV181401260
OFSF01099386
[OFSF] wastewater metagenome; Exp Tend VB 100WW
152
227
+
His
GTG
[ENA]
¢þ
>W141258886
CBXX010000003
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
137142
137067
-
His
GTG
[ENA]
¡û
>WENV170639409
JFJP01002458
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
9607
9682
+
His
GTG
[ENA]
¢þ
>C181103516
CP024645
Betaproteobacteria
Piscinibacter gummiphilus NBRC 109400 [CP024645]
3685593
3685518
-
His
GTG
-
¡û
>C191117088
CP033969
Betaproteobacteria
Cupriavidus pauculus FDAARGOS_614 [CP033969, CP033970]
2401640
2401715
+
His
GTG
-
¡û
>C191182074
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
2433900
2433825
-
His
GTG
-
¡û
>W1911572355
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1014839
1014914
+
His
GTG
[ENA]
¡û
>W1911802799
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
2448346
2448271
-
His
GTG
[ENA]
¡û
>W1810177560
PJRP01000018
Betaproteobacteria
Cupriavidus pauculus UM1 [PJRP]
112728
112803
+
His
GTG
[ENA]
¡û
>W1810475763
QAJF01000994
Betaproteobacteria
Pelomonas sp. HMWF004 [QAJF]
508
433
-
His
GTG
[ENA]
¡û
>C151062601
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
4366647
4366722
+
His
GTG
[Ensembl]
¡û
>C11105068
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
3915416
3915491
+
His
GTG
[Ensembl]
¡û
>W1511683843
LFLT01000033
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
39162
39087
-
His
GTG
[ENA]
¡û
>C161053589
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
4382736
4382811
+
His
GTG
[Ensembl]
¡û
>C161053644
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
3464496
3464571
+
His
GTG
-
¡û
>C161053688
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
4273431
4273506
+
His
GTG
[Ensembl]
¡û
>C161053740
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
3449686
3449761
+
His
GTG
[Ensembl]
¡û
>C161053788
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
4349831
4349906
+
His
GTG
[Ensembl]
¡û
>W1610070442
BCTG01000024
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
8372
8447
+
His
GTG
[ENA]
¡û
>W121085175
AKJA01000107
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
62743
62818
+
His
GTG
[ENA]
¡û
>W121086381
AKJW01000059
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
148330
148255
-
His
GTG
[ENA]
¡û
>W1610724028
LMDU01000014
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
239541
239616
+
His
GTG
[ENA]
¡û
>W1610728414
LMHE01000013
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
384731
384806
+
His
GTG
[ENA]
¡û
>W1610729435
LMHZ01000023
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
263502
263427
-
His
GTG
[ENA]
¡û
>W1710067815
BCTG01000024
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
8372
8447
+
His
GTG
[ENA]
¡û
>W1710557544
FOLC01000031
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
42944
43019
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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