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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454349 (37 seq.)
>W1710863145
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
181413
181488
+
Arg
CCG
[ENA]
¡û
>W1710871789
LMLM01000023
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
83098
83023
-
Arg
CCG
[ENA]
¡û
>W1710874780
LMNW01000033
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
149977
149902
-
Arg
CCG
[ENA]
¡û
>W1710893489
LNEU01000033
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
130886
130811
-
Arg
CCG
[ENA]
¡û
>W1711046637
LROM01000134
Betaproteobacteria
Duganella phyllosphaerae [LROM]
47082
47007
-
Arg
CCG
[ENA]
¡û
>W131176162
ARJV01000017
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
55788
55713
-
Arg
CCG
[ENA]
¡û
>C171130504
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
2572072
2572147
+
Arg
CCG
-
¡û
>C010368
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
3311383
3311308
-
Arg
CCG
[Ensembl]
¡û
>C011132
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
3972038
3971963
-
Arg
CCG
[Ensembl]
¡û
>WENV180022321
FTFY01000808
[FTFY] metagenome; soil
78
3
-
Arg
CCG
[ENA]
¢þ
>WENV180026676
FTIU01019335
[FTIU] metagenome; soil
253
178
-
Arg
CCG
[ENA]
¢þ
>WENV183744369
PJUK01012998
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
398
323
-
Arg
CCG
[ENA]
¢þ
>WENV170708871
LNFM01000012
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
48023
48098
+
Arg
CCG
[ENA]
¢þ
>W141821359
JQNN01000001
Betaproteobacteria
Massilia sp. 9096 [JQNN]
4463964
4464039
+
Arg
CCG
[ENA]
¡û
>W1911572361
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
2182994
2183069
+
Arg
CCG
[ENA]
¡û
>W1911647593
QAJP01000003
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
141500
141425
-
Arg
CCG
[ENA]
¡û
>W1911802907
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sedimenti K1S02-23 [QYUQ]
3193405
3193330
-
Arg
CCG
[ENA]
¡û
>W1810068698
PDZP01000001
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
94748
94673
-
Arg
CCG
[ENA]
¡û
>W1810297198
PTLZ01000001
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
313600
313675
+
Arg
CCG
[ENA]
¡û
>W1810400023
PYFP01000002
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
1287071
1286996
-
Arg
CCG
[ENA]
¡û
>C151062607
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
5478037
5478112
+
Arg
CCG
[Ensembl]
¡û
>C11105074
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
5010463
5010538
+
Arg
CCG
[Ensembl]
¡û
>W1511683775
LFLS01000022
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
67071
67146
+
Arg
CCG
[ENA]
¡û
>C161053595
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
5429428
5429503
+
Arg
CCG
[Ensembl]
¡û
>C161053650
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
4619066
4619141
+
Arg
CCG
-
¡û
>C161053694
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
5605159
5605234
+
Arg
CCG
[Ensembl]
¡û
>C161053746
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
4604445
4604520
+
Arg
CCG
[Ensembl]
¡û
>C161053794
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
5463490
5463565
+
Arg
CCG
[Ensembl]
¡û
>W1610725491
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
181413
181488
+
Arg
CCG
[ENA]
¡û
>W1610734135
LMLM01000023
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
83098
83023
-
Arg
CCG
[ENA]
¡û
>W1610737126
LMNW01000033
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
149977
149902
-
Arg
CCG
[ENA]
¡û
>W1610753755
LNEU01000033
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
130886
130811
-
Arg
CCG
[ENA]
¡û
>W1710530358
FNOR01000007
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
147362
147437
+
Arg
CCG
[ENA]
¡û
>W1710556459
FOKF01000031
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
707
632
-
Arg
CCG
[ENA]
¡û
>W1710557531
FOLC01000006
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
20871
20946
+
Arg
CCG
[ENA]
¡û
>W1710564214
FOQI01000002
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
349702
349627
-
Arg
CCG
[ENA]
¡û
>W1710568784
FOTW01000007
Betaproteobacteria
Rugamonas rubra [FOTW]
159577
159502
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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