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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454361 (86 seq.)
>W1710797076
LJSR01000057
Alphaproteobacteria
Rhizobium acidisoli [LJSR]
1646
1721
+
Trp
CCA
[ENA]
¡û
>W1710875329
LMOH01000015
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
1867
1942
+
Trp
CCA
[ENA]
¡û
>W1710935873
LOKU01000025
Alphaproteobacteria
Rhizobium sp. N122 [LOKU]
56546
56471
-
Trp
CCA
[ENA]
¡û
>W1711169125
LVYU01000030
Alphaproteobacteria
Rhizobium leguminosarum [LVYU]
16995
16920
-
Trp
CCA
[ENA]
¡û
>W1711172069
LWBS01000055
Alphaproteobacteria
Rhizobium leguminosarum [LWBS]
56052
55977
-
Trp
CCA
[ENA]
¡û
>W1711305262
MAMO01000161
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii [MAMO]
1864
1939
+
Trp
CCA
[ENA]
¡û
>W1711642792
MPZP01000005
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae [MPZP]
59667
59592
-
Trp
CCA
[ENA]
¡û
>W1711667395
MRDL01000032
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae USDA 2370 [MRDL]
32699
32624
-
Trp
CCA
[ENA]
¡û
>W1711667461
MRDM01000033
Alphaproteobacteria
Rhizobium laguerreae [MRDM]
1983
2058
+
Trp
CCA
[ENA]
¡û
>C171075945
CP018228
Alphaproteobacteria
Rhizobium leguminosarum Vaf-108 [CP018228]
2308973
2308898
-
Trp
CCA
-
¡û
>C171114939
CP020947
Alphaproteobacteria
Rhizobium sp. CIAT894 [CP020947]
1660093
1660168
+
Trp
CCA
-
¡û
>W131036068
AKIA01000027
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii TA1 [AKIA]
1847
1922
+
Trp
CCA
[ENA]
¡û
>W131158454
AQUC01000006
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae TOM [AQUC]
1479770
1479845
+
Trp
CCA
[ENA]
¡û
>W131158501
AQUD01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii SRDI565 [AQUD]
945607
945682
+
Trp
CCA
[ENA]
¡û
>W131158801
AQUM01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae WSM1481 [AQUM]
4695427
4695502
+
Trp
CCA
[ENA]
¡û
>W131158838
AQUN01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii SRDI943 [AQUN]
1256939
1257014
+
Trp
CCA
[ENA]
¡û
>W131160117
AQWI01000021
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae Ps8 [AQWI]
1834
1909
+
Trp
CCA
[ENA]
¡û
>W131163332
AQZR01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. phaseoli 4292 [AQZR]
713865
713940
+
Trp
CCA
[ENA]
¡û
>W131167256
ARDC01000029
Alphaproteobacteria
Rhizobium gallicum bv. gallicum R602sp [ARDC]
17073
16998
-
Trp
CCA
[ENA]
¡û
>W131167831
ARDP01000062
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae Vc2 [ARDP]
1729
1804
+
Trp
CCA
[ENA]
¡û
>W131167933
ARDR01000036
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae Vh3 [ARDR]
1686
1761
+
Trp
CCA
[ENA]
¡û
>W131168209
ARDW01000058
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae 128C53 [ARDW]
16821
16746
-
Trp
CCA
[ENA]
¡û
>W131183128
ARRT01000006
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae 248 [ARRT]
1537242
1537317
+
Trp
CCA
[ENA]
¡û
>W131214103
ATTN01000042
Alphaproteobacteria
Rhizobium leguminosarum bv. phaseoli FA23 [ATTN]
2105
2180
+
Trp
CCA
[ENA]
¡û
>W131214199
ATTP01000057
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae GB30 [ATTP]
16556
16481
-
Trp
CCA
[ENA]
¡û
>W131219383
ATYN01000042
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae UPM1137 [ATYN]
1665
1740
+
Trp
CCA
[ENA]
¡û
>W131219535
ATYQ01000036
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae VF39 [ATYQ]
17301
17226
-
Trp
CCA
[ENA]
¡û
>W131219988
ATYZ01000035
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae UPM1131 [ATYZ]
16573
16498
-
Trp
CCA
[ENA]
¡û
>C018698
AM236080
Alphaproteobacteria
Rhizobium johnstonii 3841 [AM236080]
1858899
1858974
+
Trp
CCA
[Ensembl]
¡û
>W141022668
AJUI01000036
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CC278f [AJUI]
56896
56821
-
Trp
CCA
[ENA]
¡û
>W08007053
ABJS01000016
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM1325 [ABJS]
21719
21794
+
Trp
CCA
[ENA]
¡û
>W08007900
ABKO01000007
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM2304 [ABKO]
319644
319719
+
Trp
CCA
[ENA]
¡û
>W141220326
AZXS01000094
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CC283b [AZXS]
32899
32824
-
Trp
CCA
[ENA]
¡û
>C181068750
CP022564
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae BIHB 1148 [CP022564]
1362146
1362071
-
Trp
CCA
-
¡û
>C181070699
CP022665
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae BIHB 1217 [CP022665]
346751
346676
-
Trp
CCA
-
¡û
>C181110676
CP025012
Alphaproteobacteria
Rhizobium leguminosarum Norway [CP025012]
1416888
1416963
+
Trp
CCA
-
¡û
>C181118138
CP025509
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae UPM791 [CP025509]
1496751
1496826
+
Trp
CCA
-
¡û
>C181192325
CP030760
Alphaproteobacteria
Rhizobium leguminosarum ATCC 14479 [CP030760]
86829
86904
+
Trp
CCA
-
¡û
>C191133529
CP034998
Alphaproteobacteria
Rhizobium acidisoli FH23 [CP034998]
1329785
1329860
+
Trp
CCA
-
¡û
>W1910636661
LOID01000001
Alphaproteobacteria
Rhizobium sp. N4311 [LOID]
1826174
1826249
+
Trp
CCA
[ENA]
¡û
>W1910839936
MZMU01000007
Alphaproteobacteria
Rhizobium leguminosarum Tri-43 [MZMU]
1906
1981
+
Trp
CCA
[ENA]
¡û
>W1910842037
NAOP01000006
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CCGM6 [NAOP]
186562
186637
+
Trp
CCA
[ENA]
¡û
>W1910842038
NAOP01000006
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CCGM6 [NAOP]
205828
205903
+
Trp
CCA
[ENA]
¡û
>C09108819
CP001622
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM1325 [CP001622]
1411100
1411175
+
Trp
CCA
[Ensembl]
¡û
>C09108870
CP001191
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM2304 [CP001191]
1344481
1344556
+
Trp
CCA
[Ensembl]
¡û
>W1911408914
NWSJ01000052
Alphaproteobacteria
Rhizobium anhuiense J3 [NWSJ]
16502
16427
-
Trp
CCA
[ENA]
¡û
>W1911408953
NWSK01000042
Alphaproteobacteria
Rhizobium anhuiense S10 [NWSK]
16504
16429
-
Trp
CCA
[ENA]
¡û
>W1911408993
NWSL01000061
Alphaproteobacteria
Rhizobium anhuiense Y27 [NWSL]
1666
1741
+
Trp
CCA
[ENA]
¡û
>W1911409039
NWSM01000038
Alphaproteobacteria
Rhizobium anhuiense JX3 [NWSM]
1731
1806
+
Trp
CCA
[ENA]
¡û
>W1911409084
NWSN01000042
Alphaproteobacteria
Rhizobium anhuiense C15 [NWSN]
16519
16444
-
Trp
CCA
[ENA]
¡û
>W1911409221
NWSQ01000051
Alphaproteobacteria
Rhizobium sp. L43 [NWSQ]
16814
16739
-
Trp
CCA
[ENA]
¡û
>W1911409265
NWSR01000047
Alphaproteobacteria
Rhizobium sp. L18 [NWSR]
16532
16457
-
Trp
CCA
[ENA]
¡û
>W1911409398
NWSV01000053
Alphaproteobacteria
Rhizobium chutanense C5 [NWSV]
16598
16523
-
Trp
CCA
[ENA]
¡û
>W1810504581
QBLB01000053
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae USDA 2370 [QBLB]
32748
32673
-
Trp
CCA
[ENA]
¡û
>SRA1014336
SRR023845.94116
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
150
225
+
Trp
CCA
[SRA]
>C151016645
CP007045
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM1689 [CP007045]
1494028
1494103
+
Trp
CCA
[Ensembl]
¡û
>W1511358820
JRXL01000006
Alphaproteobacteria
Rhizobium brockwellii bv. trifolii CC275e [JRXL]
2361
2436
+
Trp
CCA
[ENA]
¡û
>W1511433705
JUHK01000025
Alphaproteobacteria
Rhizobium tropici CF286 [JUHK]
17028
16953
-
Trp
CCA
[ENA]
¡û
>W1511434110
JUHS01000030
Alphaproteobacteria
Rhizobium leguminosarum CF307 [JUHS]
16554
16479
-
Trp
CCA
[ENA]
¡û
>W1511434204
JUHU01000035
Alphaproteobacteria
Rhizobium leguminosarum OV152 [JUHU]
11153
11228
+
Trp
CCA
[ENA]
¡û
>C161057964
CP013630
Alphaproteobacteria
Rhizobium sp. N324 [CP013630]
1795173
1795248
+
Trp
CCA
-
¡û
>C161058013
CP013636
Alphaproteobacteria
Rhizobium sp. N541 [CP013636]
1760536
1760611
+
Trp
CCA
-
¡û
>C161058062
CP013643
Alphaproteobacteria
Rhizobium sp. N941 [CP013643]
1760236
1760311
+
Trp
CCA
[Ensembl]
¡û
>C161095803
CP016286
Alphaproteobacteria
Rhizobium leguminosarum Vaf10 [CP016286]
926889
926964
+
Trp
CCA
-
¡û
>W121068174
AJUF01000020
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae WSM1455 [AJUF]
557750
557825
+
Trp
CCA
[ENA]
¡û
>W121068241
AJUH01000021
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WU95 [AJUH]
1633
1708
+
Trp
CCA
[ENA]
¡û
>W121068316
AJUK01000012
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM2297 [AJUK]
1876
1951
+
Trp
CCA
[ENA]
¡û
>W121084275
AKHZ01000006
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM597 [AKHZ]
57477
57402
-
Trp
CCA
[ENA]
¡û
>W1610056591
BBWJ01000065
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
15769
15694
-
Trp
CCA
[ENA]
¡û
>W1610056744
BBWM01000083
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
1757
1832
+
Trp
CCA
[ENA]
¡û
>W1610057029
BBWS01000062
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
1757
1832
+
Trp
CCA
[ENA]
¡û
>W1610588113
LDPZ01000013
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
34066
33991
-
Trp
CCA
[ENA]
¡û
>W1610588196
LDQA01000064
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
15783
15708
-
Trp
CCA
[ENA]
¡û
>W1610661033
LJSR01000057
Alphaproteobacteria
Rhizobium acidisoli [LJSR]
1646
1721
+
Trp
CCA
[ENA]
¡û
>W1610737675
LMOH01000015
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
1867
1942
+
Trp
CCA
[ENA]
¡û
>W1610978920
LVYU01000030
Alphaproteobacteria
Rhizobium leguminosarum [LVYU]
16995
16920
-
Trp
CCA
[ENA]
¡û
>W1610980674
LWBS01000055
Alphaproteobacteria
Rhizobium leguminosarum [LWBS]
56052
55977
-
Trp
CCA
[ENA]
¡û
>W1610990617
LWMO01000022
Alphaproteobacteria
Rhizobium anhuiense WYCCWR10015 [LWMO]
16539
16464
-
Trp
CCA
[ENA]
¡û
>W1610995849
LXFU01000027
Alphaproteobacteria
Rhizobium sp. WYCCWR10014 [LXFU]
173351
173276
-
Trp
CCA
[ENA]
¡û
>W1611054804
MAMO01000161
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii [MAMO]
1864
1939
+
Trp
CCA
[ENA]
¡û
>W1710053290
BBWJ01000065
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
15769
15694
-
Trp
CCA
[ENA]
¡û
>W1710053443
BBWM01000083
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
1757
1832
+
Trp
CCA
[ENA]
¡û
>W1710053728
BBWS01000062
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
1757
1832
+
Trp
CCA
[ENA]
¡û
>W1710561285
FOOA01000039
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
1849
1924
+
Trp
CCA
[ENA]
¡û
>W1710707393
LDPZ01000013
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
34066
33991
-
Trp
CCA
[ENA]
¡û
>W1710707476
LDQA01000064
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
15783
15708
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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