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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454389 (37 seq.)
>W1711129652
LUUF01000050
Gammaproteobacteria
Methylomonas methanica [LUUF]
69941
70016
+
Phe
GAA
[ENA]
¡û
>W1711129653
LUUF01000050
Gammaproteobacteria
Methylomonas methanica [LUUF]
70040
70115
+
Phe
GAA
[ENA]
¡û
>W1711129711
LUUG01000117
Gammaproteobacteria
Methylomonas methanica [LUUG]
102349
102424
+
Phe
GAA
[ENA]
¡û
>W1711129712
LUUG01000117
Gammaproteobacteria
Methylomonas methanica [LUUG]
102448
102523
+
Phe
GAA
[ENA]
¡û
>W1711129754
LUUH01000082
Gammaproteobacteria
Methylomonas methanica [LUUH]
109353
109428
+
Phe
GAA
[ENA]
¡û
>W1711129755
LUUH01000082
Gammaproteobacteria
Methylomonas methanica [LUUH]
109452
109527
+
Phe
GAA
[ENA]
¡û
>W1711129777
LUUI01000105
Gammaproteobacteria
Methylomonas lenta [LUUI]
56780
56855
+
Phe
GAA
[ENA]
¡û
>W1711129779
LUUI01000111
Gammaproteobacteria
Methylomonas lenta [LUUI]
8358
8433
+
Phe
GAA
[ENA]
¡û
>W1711129889
LUUK01000232
Gammaproteobacteria
Methylomonas koyamae [LUUK]
13780
13705
-
Phe
GAA
[ENA]
¡û
>W131155763
AQOV01000001
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
1477089
1477014
-
Phe
GAA
[ENA]
¡û
>W131155764
AQOV01000001
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
1476990
1476915
-
Phe
GAA
[ENA]
¡û
>W1711494866
MKMC01000045
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
80511
80436
-
Phe
GAA
[ENA]
¡û
>W141219952
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
211573
211498
-
Phe
GAA
[ENA]
¡û
>W141219953
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
211474
211399
-
Phe
GAA
[ENA]
¡û
>WENV170577481
FSSH01000056
[FSSH] freshwater metagenome; drinking water
13988
13913
-
Phe
GAA
[ENA]
¢þ
>WENV170577482
FSSH01000056
[FSSH] freshwater metagenome; drinking water
13889
13814
-
Phe
GAA
[ENA]
¢þ
>C191105422
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
1794615
1794690
+
Phe
GAA
-
¡û
>C191105423
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
1794714
1794789
+
Phe
GAA
-
¡û
>W141733705
JNLB01000007
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
140595
140670
+
Phe
GAA
[ENA]
¡û
>W141733706
JNLB01000007
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
140694
140769
+
Phe
GAA
[ENA]
¡û
>W1810154912
PIZT01000002
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
137815
137890
+
Phe
GAA
[ENA]
¡û
>W1810154913
PIZT01000002
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
137914
137989
+
Phe
GAA
[ENA]
¡û
>C11114728
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
2874115
2874190
+
Phe
GAA
[Ensembl]
¡û
>C11114756
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
1403836
1403761
-
Phe
GAA
[Ensembl]
¡û
>W1511397869
JTDD01000036
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
27547
27472
-
Phe
GAA
[ENA]
¡û
>W1511397870
JTDD01000036
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
27448
27373
-
Phe
GAA
[ENA]
¡û
>C161072444
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
3751169
3751244
+
Phe
GAA
[Ensembl]
¡û
>C161072445
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
3751268
3751343
+
Phe
GAA
[Ensembl]
¡û
>W1610940725
LUUF01000050
Gammaproteobacteria
Methylomonas methanica [LUUF]
69941
70016
+
Phe
GAA
[ENA]
¡û
>W1610940726
LUUF01000050
Gammaproteobacteria
Methylomonas methanica [LUUF]
70040
70115
+
Phe
GAA
[ENA]
¡û
>W1610940784
LUUG01000117
Gammaproteobacteria
Methylomonas methanica [LUUG]
102349
102424
+
Phe
GAA
[ENA]
¡û
>W1610940785
LUUG01000117
Gammaproteobacteria
Methylomonas methanica [LUUG]
102448
102523
+
Phe
GAA
[ENA]
¡û
>W1610940827
LUUH01000082
Gammaproteobacteria
Methylomonas methanica [LUUH]
109353
109428
+
Phe
GAA
[ENA]
¡û
>W1610940828
LUUH01000082
Gammaproteobacteria
Methylomonas methanica [LUUH]
109452
109527
+
Phe
GAA
[ENA]
¡û
>W1610940850
LUUI01000105
Gammaproteobacteria
Methylomonas lenta [LUUI]
56780
56855
+
Phe
GAA
[ENA]
¡û
>W1610940852
LUUI01000111
Gammaproteobacteria
Methylomonas lenta [LUUI]
8358
8433
+
Phe
GAA
[ENA]
¡û
>W1610940962
LUUK01000232
Gammaproteobacteria
Methylomonas koyamae [LUUK]
13780
13705
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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