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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45439 (65 seq.)
>W1711624672
MPHL01000006
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
74028
74115
+
Ser
GGA
[ENA]
¡û
>W1711678531
MRUG01000033
Gammaproteobacteria
Alteromonadales bacterium BS08 [MRUG]
272621
272534
-
Ser
GGA
[ENA]
¡û
>W1711767396
MUZU01000007
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
43296
43209
-
Ser
GGA
[ENA]
¡û
>W1711767488
MUZV01000023
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
5114
5027
-
Ser
GGA
[ENA]
¡û
>W1711947461
NBOC01000012
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
109536
109623
+
Ser
GGA
[ENA]
¡û
>W1711947532
NBOD01000014
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
5155
5068
-
Ser
GGA
[ENA]
¡û
>W1711947603
NBOE01000019
Gammaproteobacteria
Colwellia polaris [NBOE]
30037
30124
+
Ser
GGA
[ENA]
¡û
>W1711947697
NBOG01000001
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
1046
959
-
Ser
GGA
[ENA]
¡û
>C171034467
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
3226127
3226214
+
Ser
GGA
-
¡û
>C171108367
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
3251045
3251132
+
Ser
GGA
-
¡û
>C020874
CP000282
Gammaproteobacteria
Saccharophagus degradans 2-40 [CP000282]
1511252
1511339
+
Ser
GGA
[Ensembl]
¡û
>WENV180389265
OBPI01105210
[OBPI] marine metagenome; Sterile flask
139
226
+
Ser
GGA
[ENA]
¢þ
>WENV181304619
OFIA01010857
[OFIA] marine metagenome; seawater
481
394
-
Ser
GGA
[ENA]
¢þ
>WENV181320381
OFKG01018376
[OFKG] marine metagenome; seawater
350
437
+
Ser
GGA
[ENA]
¢þ
>WENV182540220
OJAF01000299
[OJAF] seawater metagenome; Sea water
4347
4434
+
Ser
GGA
[ENA]
¢þ
>WENV182542051
OJAV01000857
[OJAV] seawater metagenome; Sea water
9655
9742
+
Ser
GGA
[ENA]
¢þ
>WENV182543674
OJBC01000186
[OJBC] seawater metagenome; Sea water
29170
29257
+
Ser
GGA
[ENA]
¢þ
>WENV182544643
OJBI01000661
[OJBI] seawater metagenome; Sea water
1516
1603
+
Ser
GGA
[ENA]
¢þ
>WENV182544768
OJBJ01001748
[OJBJ] seawater metagenome; Sea water
635
548
-
Ser
GGA
[ENA]
¢þ
>WENV182545181
OJBM01004047
[OJBM] seawater metagenome; Sea water
12
99
+
Ser
GGA
[ENA]
¢þ
>WENV182550161
OJBZ01007058
[OJBZ] seawater metagenome; Sea water
1555
1642
+
Ser
GGA
[ENA]
¢þ
>WENV182552475
OJCK01000306
[OJCK] seawater metagenome; Sea water
683
596
-
Ser
GGA
[ENA]
¢þ
>WENV182554725
OJCW01003608
[OJCW] seawater metagenome; Sea water
611
524
-
Ser
GGA
[ENA]
¢þ
>WENV182555253
OJCY01022539
[OJCY] seawater metagenome; Sea water
534
447
-
Ser
GGA
[ENA]
¢þ
>WENV182557379
OJDI01017322
[OJDI] seawater metagenome; Sea water
141
228
+
Ser
GGA
[ENA]
¢þ
>WENV182558113
OJDL01005471
[OJDL] seawater metagenome; Sea water
611
524
-
Ser
GGA
[ENA]
¢þ
>WENV182558835
OJDN01005867
[OJDN] seawater metagenome; Sea water
635
548
-
Ser
GGA
[ENA]
¢þ
>WENV182559210
OJDO01004027
[OJDO] seawater metagenome; Sea water
579
492
-
Ser
GGA
[ENA]
¢þ
>WENV182562499
OJDZ01005102
[OJDZ] seawater metagenome; Sea water
572
485
-
Ser
GGA
[ENA]
¢þ
>WENV182565509
OJEH01009115
[OJEH] seawater metagenome; Sea water
1527
1614
+
Ser
GGA
[ENA]
¢þ
>WENV182565938
OJEI01002513
[OJEI] seawater metagenome; Sea water
611
524
-
Ser
GGA
[ENA]
¢þ
>WENV182566256
OJEJ01003875
[OJEJ] seawater metagenome; Sea water
781
694
-
Ser
GGA
[ENA]
¢þ
>WENV182567211
OJEN01015198
[OJEN] seawater metagenome; Sea water
143
230
+
Ser
GGA
[ENA]
¢þ
>WENV182567473
OJEO01001750
[OJEO] seawater metagenome; Sea water
4834
4921
+
Ser
GGA
[ENA]
¢þ
>WENV182567985
OJEP01007432
[OJEP] seawater metagenome; Sea water
1279
1366
+
Ser
GGA
[ENA]
¢þ
>WENV182568321
OJET01001145
[OJET] seawater metagenome; Sea water
511
424
-
Ser
GGA
[ENA]
¢þ
>WENV182568720
OJEW01001506
[OJEW] seawater metagenome; Sea water
1628
1715
+
Ser
GGA
[ENA]
¢þ
>WENV182568929
OJEX01003907
[OJEX] seawater metagenome; Sea water
1148
1061
-
Ser
GGA
[ENA]
¢þ
>WENV182572572
OJFL01030624
[OJFL] seawater metagenome; Sea water
210
297
+
Ser
GGA
[ENA]
¢þ
>WENV182573126
OJFP01000140
[OJFP] seawater metagenome; Sea water
55518
55605
+
Ser
GGA
[ENA]
¢þ
>WENV182574895
OJFS01005950
[OJFS] seawater metagenome; Sea water
1424
1511
+
Ser
GGA
[ENA]
¢þ
>WENV182575424
OJFU01017798
[OJFU] seawater metagenome; Sea water
588
501
-
Ser
GGA
[ENA]
¢þ
>WENV182576298
OJFX01009049
[OJFX] seawater metagenome; Sea water
1716
1803
+
Ser
GGA
[ENA]
¢þ
>WENV182576981
OJGC01000103
[OJGC] seawater metagenome; Sea water
29170
29257
+
Ser
GGA
[ENA]
¢þ
>WENV182581476
OJGX01008466
[OJGX] seawater metagenome; Sea water
1688
1775
+
Ser
GGA
[ENA]
¢þ
>WENV182584520
OJHG01001103
[OJHG] seawater metagenome; Sea water
8758
8845
+
Ser
GGA
[ENA]
¢þ
>WENV182585189
OJHH01003028
[OJHH] seawater metagenome; Sea water
3
90
+
Ser
GGA
[ENA]
¢þ
>WENV182586988
OJHK01026322
[OJHK] seawater metagenome; Sea water
141
228
+
Ser
GGA
[ENA]
¢þ
>WENV182588120
OJHO01005133
[OJHO] seawater metagenome; Sea water
1137
1050
-
Ser
GGA
[ENA]
¢þ
>WENV182589071
OJHY01018349
[OJHY] seawater metagenome; Sea water
255
342
+
Ser
GGA
[ENA]
¢þ
>WENV182590632
OJIJ01000827
[OJIJ] seawater metagenome; Sea water
2798
2885
+
Ser
GGA
[ENA]
¢þ
>WENV182592644
OJIR01006537
[OJIR] seawater metagenome; Sea water
781
694
-
Ser
GGA
[ENA]
¢þ
>WENV182594198
OJIV01001439
[OJIV] seawater metagenome; Sea water
613
526
-
Ser
GGA
[ENA]
¢þ
>WENV183055373
OLGX01011482
[OLGX] seawater metagenome; Sea water
63
150
+
Ser
GGA
[ENA]
¢þ
>WENV183057772
OLHM01003827
[OLHM] seawater metagenome; Sea water
1527
1614
+
Ser
GGA
[ENA]
¢þ
>WENV183058086
OLHN01003193
[OLHN] seawater metagenome; Sea water
611
524
-
Ser
GGA
[ENA]
¢þ
>WENV183060066
OLHW01007731
[OLHW] seawater metagenome; Sea water
468
555
+
Ser
GGA
[ENA]
¢þ
>WENV170764729
LWDU01033295
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
69234
69147
-
Ser
GGA
[ENA]
¢þ
>C181169951
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
3093942
3093855
-
Ser
GGA
-
¡û
>W09100584
AABI03000016
Gammaproteobacteria
Saccharophagus degradans 2-40 [AABI]
2331
2244
-
Ser
GGA
[ENA]
¡û
>C191128334
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
1308480
1308567
+
Ser
GGA
-
¡û
>C191130492
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1070618
1070531
-
Ser
GGA
-
¡û
>W1911770247
QXIO01000011
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
64899
64812
-
Ser
GGA
[ENA]
¡û
>W1510865164
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
4162692
4162605
-
Ser
GGA
[ENA]
¡û
>W1710545267
FOBI01000016
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
833
746
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK