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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454392 (35 seq.)
>W1711129664
LUUF01000077
Gammaproteobacteria
Methylomonas methanica [LUUF]
141970
142045
+
Lys
TTT
[ENA]
¡û
>W1711129691
LUUG01000059
Gammaproteobacteria
Methylomonas methanica [LUUG]
19768
19693
-
Lys
TTT
[ENA]
¡û
>W1711129752
LUUH01000078
Gammaproteobacteria
Methylomonas methanica [LUUH]
4984
4909
-
Lys
TTT
[ENA]
¡û
>W1711129776
LUUI01000095
Gammaproteobacteria
Methylomonas lenta [LUUI]
57393
57318
-
Lys
TTT
[ENA]
¡û
>W1711129810
LUUJ01000034
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
64051
64126
+
Lys
TTT
[ENA]
¡û
>W1711129883
LUUK01000201
Gammaproteobacteria
Methylomonas koyamae [LUUK]
4464
4539
+
Lys
TTT
[ENA]
¡û
>W131099688
AOTL01000023
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
7631
7706
+
Lys
TTT
[ENA]
¡û
>W131155753
AQOV01000001
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
2155818
2155743
-
Lys
TTT
[ENA]
¡û
>W131186032
ARVS01000004
Gammaproteobacteria
Methylobacter marinus A45 [ARVS]
769960
770035
+
Lys
TTT
[ENA]
¡û
>W131219209
ATYJ01000001
Gammaproteobacteria
Methylobacter luteus IMV-B-3098 [ATYJ]
2350315
2350240
-
Lys
TTT
[ENA]
¡û
>W1711494833
MKMC01000006
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
28534
28459
-
Lys
TTT
[ENA]
¡û
>WENV181144430
OEHO01016345
[OEHO] metagenome; unknown
314
239
-
Lys
TTT
[ENA]
¢þ
>W141219925
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
3051140
3051215
+
Lys
TTT
[ENA]
¡û
>WENV170577589
FSSH01000240
[FSSH] freshwater metagenome; drinking water
29999
30074
+
Lys
TTT
[ENA]
¢þ
>WENV170962811
MRWF01027322
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
255489
255564
+
Lys
TTT
[ENA]
¢þ
>WENV170963643
MRWG01000417
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
34826
34751
-
Lys
TTT
[ENA]
¢þ
>C181088699
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
942566
942491
-
Lys
TTT
-
¡û
>C191105435
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
4205898
4205823
-
Lys
TTT
-
¡û
>C191143444
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
3720067
3719992
-
Lys
TTT
-
¡û
>W141733715
JNLB01000013
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
132397
132472
+
Lys
TTT
[ENA]
¡û
>W141817449
JQKS01000009
Gammaproteobacteria
Methylobacter sp. BBA5.1 [JQKS]
26627
26552
-
Lys
TTT
[ENA]
¡û
>W141821726
JQNS01000007
Gammaproteobacteria
Methylobacter whittenburyi [JQNS]
1245737
1245662
-
Lys
TTT
[ENA]
¡û
>W1810154939
PIZT01000068
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
132092
132167
+
Lys
TTT
[ENA]
¡û
>C11114758
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
402889
402814
-
Lys
TTT
[Ensembl]
¡û
>W1511397868
JTDD01000030
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
127632
127707
+
Lys
TTT
[ENA]
¡û
>C161072149
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
925175
925100
-
Lys
TTT
[Ensembl]
¡û
>C161072463
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
1219102
1219027
-
Lys
TTT
[Ensembl]
¡û
>W1610046498
BBCK01000139
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
2055
1980
-
Lys
TTT
[ENA]
¡û
>W1610940737
LUUF01000077
Gammaproteobacteria
Methylomonas methanica [LUUF]
141970
142045
+
Lys
TTT
[ENA]
¡û
>W1610940764
LUUG01000059
Gammaproteobacteria
Methylomonas methanica [LUUG]
19768
19693
-
Lys
TTT
[ENA]
¡û
>W1610940825
LUUH01000078
Gammaproteobacteria
Methylomonas methanica [LUUH]
4984
4909
-
Lys
TTT
[ENA]
¡û
>W1610940849
LUUI01000095
Gammaproteobacteria
Methylomonas lenta [LUUI]
57393
57318
-
Lys
TTT
[ENA]
¡û
>W1610940883
LUUJ01000034
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
64051
64126
+
Lys
TTT
[ENA]
¡û
>W1610940956
LUUK01000201
Gammaproteobacteria
Methylomonas koyamae [LUUK]
4464
4539
+
Lys
TTT
[ENA]
¡û
>W1710043294
BBCK01000139
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
2055
1980
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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