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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454394 (35 seq.)
>W1711129641
LUUF01000003
Gammaproteobacteria
Methylomonas methanica [LUUF]
10592
10517
-
Asn
GTT
[ENA]
¡û
>W1711129705
LUUG01000087
Gammaproteobacteria
Methylomonas methanica [LUUG]
15458
15533
+
Asn
GTT
[ENA]
¡û
>W1711129735
LUUH01000046
Gammaproteobacteria
Methylomonas methanica [LUUH]
18070
18145
+
Asn
GTT
[ENA]
¡û
>W1711129799
LUUI01000163
Gammaproteobacteria
Methylomonas lenta [LUUI]
13651
13576
-
Asn
GTT
[ENA]
¡û
>W1711129877
LUUK01000177
Gammaproteobacteria
Methylomonas koyamae [LUUK]
48093
48168
+
Asn
GTT
[ENA]
¡û
>W1711129909
LUUL01000068
Gammaproteobacteria
Methylomonas koyamae [LUUL]
14576
14501
-
Asn
GTT
[ENA]
¡û
>W131099656
AOTL01000006
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
367465
367390
-
Asn
GTT
[ENA]
¡û
>W131155759
AQOV01000001
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
1947274
1947199
-
Asn
GTT
[ENA]
¡û
>W131163537
AQZU01000003
Gammaproteobacteria
Methylovulum miyakonense HT12 [AQZU]
145621
145546
-
Asn
GTT
[ENA]
¡û
>W1711494874
MKMC01000067
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
2918
2843
-
Asn
GTT
[ENA]
¡û
>W141187107
AYLO01000091
Gammaproteobacteria
Methyloglobulus morosus KoM1 [AYLO]
13466
13541
+
Asn
GTT
[ENA]
¡û
>W141219948
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
842355
842280
-
Asn
GTT
[ENA]
¡û
>WENV183661533
ORJL010116373
[ORJL] groundwater metagenome; groundwater
66490
66565
+
Asn
GTT
[ENA]
¢þ
>WENV170557129
CXWL01019753
[CXWL] groundwater metagenome; biofilm material
1695
1620
-
Asn
GTT
[ENA]
¢þ
>WENV170577448
FSSH01000017
[FSSH] freshwater metagenome; drinking water
180805
180880
+
Asn
GTT
[ENA]
¢þ
>C181059047
CP022129
Gammaproteobacteria
Methylovulum psychrotolerans HV10_M2 [CP022129]
1998973
1998898
-
Asn
GTT
-
¡û
>C181088685
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
3660925
3660850
-
Asn
GTT
-
¡û
>C191027185
CP024202
Gammaproteobacteria
Methylomicrobium sp. wino1 [CP024202]
2291774
2291849
+
Asn
GTT
-
¡û
>C191105418
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
1398610
1398685
+
Asn
GTT
-
¡û
>C191143429
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
1758865
1758940
+
Asn
GTT
-
¡û
>W141733710
JNLB01000010
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
163380
163305
-
Asn
GTT
[ENA]
¡û
>W141807562
JPON01000001
Gammaproteobacteria
Methylomarinum vadi [JPON]
3916069
3916144
+
Asn
GTT
[ENA]
¡û
>W1810090408
PGFZ01000007
Gammaproteobacteria
Methylovulum psychrotolerans Sph1 [PGFZ]
218316
218241
-
Asn
GTT
[ENA]
¡û
>W1810154937
PIZT01000016
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
44937
45012
+
Asn
GTT
[ENA]
¡û
>C151098017
FO082060
Gammaproteobacteria
Methylotuvimicrobium alcaliphilum 20Z [FO082060]
3256524
3256449
-
Asn
GTT
[Ensembl]
¡û
>C11114751
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
4110063
4109988
-
Asn
GTT
[Ensembl]
¡û
>W1511397854
JTDD01000002
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
54128
54203
+
Asn
GTT
[ENA]
¡û
>C161072135
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
3532419
3532344
-
Asn
GTT
[Ensembl]
¡û
>C161072470
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
742398
742323
-
Asn
GTT
[Ensembl]
¡û
>W1610940714
LUUF01000003
Gammaproteobacteria
Methylomonas methanica [LUUF]
10592
10517
-
Asn
GTT
[ENA]
¡û
>W1610940778
LUUG01000087
Gammaproteobacteria
Methylomonas methanica [LUUG]
15458
15533
+
Asn
GTT
[ENA]
¡û
>W1610940808
LUUH01000046
Gammaproteobacteria
Methylomonas methanica [LUUH]
18070
18145
+
Asn
GTT
[ENA]
¡û
>W1610940872
LUUI01000163
Gammaproteobacteria
Methylomonas lenta [LUUI]
13651
13576
-
Asn
GTT
[ENA]
¡û
>W1610940950
LUUK01000177
Gammaproteobacteria
Methylomonas koyamae [LUUK]
48093
48168
+
Asn
GTT
[ENA]
¡û
>W1610940982
LUUL01000068
Gammaproteobacteria
Methylomonas koyamae [LUUL]
14576
14501
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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