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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454430 (85 seq.)
>W1710785348
LJHU01000013
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
31748
31673
-
Ala
CGC
[ENA]
¡û
>W1710862000
LMEB01000007
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
141390
141465
+
Ala
CGC
[ENA]
¡û
>W1710863842
LMFL01000010
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
77156
77231
+
Ala
CGC
[ENA]
¡û
>W1710863846
LMFL01000012
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
578476
578401
-
Ala
CGC
[ENA]
¡û
>W1710865532
LMGT01000001
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
173199
173124
-
Ala
CGC
[ENA]
¡û
>W1710873841
LMNC01000004
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
202850
202925
+
Ala
CGC
[ENA]
¡û
>W1710876103
LMOY01000008
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
213736
213811
+
Ala
CGC
[ENA]
¡û
>W1710877288
LMPZ01000001
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
532532
532607
+
Ala
CGC
[ENA]
¡û
>W1711407955
MGLI01000098
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
1301
1376
+
Ala
CGC
[ENA]
¡û
>W1711407993
MGLN01000011
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
2025
1950
-
Ala
CGC
[ENA]
¡û
>W1711718120
MTHE01000011
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
56968
56893
-
Ala
CGC
[ENA]
¡û
>W1712106207
NIVP01000032
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
182
107
-
Ala
CGC
[ENA]
¡û
>C171094888
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
74217
74142
-
Ala
CGC
-
¡û
>W131052423
AMYY01000008
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
81287
81362
+
Ala
CGC
[ENA]
¡û
>W131218271
ATXN01000004
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
37123
37198
+
Ala
CGC
[ENA]
¡û
>W131221554
AUAO01000002
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
285155
285230
+
Ala
CGC
[ENA]
¡û
>WENV180013981
FPIC01021395
[FPIC] soil metagenome; Soil
76
1
-
Ala
CGC
[ENA]
¢þ
>W141043015
AMFA01000115
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
14505
14580
+
Ala
CGC
[ENA]
¡û
>W08010853
ABRU01000060
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
186613
186541
-
Ala
CGC
[ENA]
¡û
>WENV180878744
ODLX01029052
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
193
118
-
Ala
CGC
[ENA]
¢þ
>WENV181169736
OEIV010008825
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1333
1408
+
Ala
CGC
[ENA]
¢þ
>WENV181223014
OFDC01001160
[OFDC] hot springs metagenome; Water
1116
1041
-
Ala
CGC
[ENA]
¢þ
>WENV181227101
OFDN01001772
[OFDN] hot springs metagenome; Water
12550
12475
-
Ala
CGC
[ENA]
¢þ
>WENV181371459
OFQV01006365
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
227
152
-
Ala
CGC
[ENA]
¢þ
>WENV181378482
OFRB01010329
[OFRB] wastewater metagenome; Exp Tend CN 0WW
461
386
-
Ala
CGC
[ENA]
¢þ
>WENV181379074
OFRC01017798
[OFRC] wastewater metagenome; Exp Tend CN 10WW
126
51
-
Ala
CGC
[ENA]
¢þ
>WENV181384367
OFRI01000386
[OFRI] wastewater metagenome; Exp Tend VB 90WW
2254
2179
-
Ala
CGC
[ENA]
¢þ
>WENV181402313
OFTY01000531
[OFTY] sludge metagenome; sludge
16229
16154
-
Ala
CGC
[ENA]
¢þ
>W141230456
BATC01000006
Alphaproteobacteria
Brevundimonas abyssalis TAR-001 [BATC]
49028
48953
-
Ala
CGC
[ENA]
¡û
>WENV183727503
PJTP01000008
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
510535
510460
-
Ala
CGC
[ENA]
¢þ
>WENV183728332
PJTQ01000018
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
389386
389311
-
Ala
CGC
[ENA]
¢þ
>WENV183730990
PJTS01003459
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
324
249
-
Ala
CGC
[ENA]
¢þ
>WENV183733446
PJTY01002177
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
4733
4658
-
Ala
CGC
[ENA]
¢þ
>WENV183735418
PJUB01000002
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
31357
31432
+
Ala
CGC
[ENA]
¢þ
>WENV183738839
PJUE01000282
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
32651
32726
+
Ala
CGC
[ENA]
¢þ
>WENV183740102
PJUF01000337
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
14355
14280
-
Ala
CGC
[ENA]
¢þ
>WENV170574250
FLYM01017868
[FLYM] hot springs metagenome; Sediment
3789
3864
+
Ala
CGC
[ENA]
¢þ
>WENV170574552
FLYM01058004
[FLYM] hot springs metagenome; Sediment
6078
6003
-
Ala
CGC
[ENA]
¢þ
>WENV170646011
JQGF01006397
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
281
206
-
Ala
CGC
[ENA]
¢þ
>WENV170712125
LNFM01009920
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
21546
21621
+
Ala
CGC
[ENA]
¢þ
>WENV170841200
MDSZ01217936
[MDSZ] marine metagenome; seawater
78908
78983
+
Ala
CGC
[ENA]
¢þ
>C181056261
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
1240386
1240311
-
Ala
CGC
-
¡û
>C191094023
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
1254064
1253989
-
Ala
CGC
-
¡û
>C191134459
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
949229
949154
-
Ala
CGC
-
¡û
>C191157396
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
2690037
2689962
-
Ala
CGC
-
¡û
>C191159611
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
1023419
1023494
+
Ala
CGC
-
¡û
>C191166098
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
640714
640789
+
Ala
CGC
-
¡û
>C191189150
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
301744
301669
-
Ala
CGC
-
¡û
>C191220433
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
3004055
3004130
+
Ala
CGC
-
¡û
>W141551910
JHOF01000005
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
146394
146319
-
Ala
CGC
[ENA]
¡û
>W141712450
JMQR01000072
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
13861
13786
-
Ala
CGC
[ENA]
¡û
>W141731221
JNIX01000007
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
55611
55536
-
Ala
CGC
[ENA]
¡û
>W1910182665
BJNC01000001
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
417387
417312
-
Ala
CGC
[ENA]
¡û
>W1910374347
FUIE01000080
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
32372
32297
-
Ala
CGC
[ENA]
¡û
>W1910725224
MGLJ01000286
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
6067
5992
-
Ala
CGC
[ENA]
¡û
>W1910725262
MGLK01000019
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
109107
109182
+
Ala
CGC
[ENA]
¡û
>W1911566755
PCPB01000014
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
19450
19525
+
Ala
CGC
[ENA]
¡û
>W1911566965
PCPF01000016
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
76734
76659
-
Ala
CGC
[ENA]
¡û
>W1911567207
PCPK01000015
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
9098
9173
+
Ala
CGC
[ENA]
¡û
>W1911567311
PCPM01000035
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
19457
19532
+
Ala
CGC
[ENA]
¡û
>W1911567377
PCPO01000001
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
134681
134756
+
Ala
CGC
[ENA]
¡û
>W1911738156
QUOQ01000004
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
223171
223246
+
Ala
CGC
[ENA]
¡û
>W1911760354
QWTZ01000010
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
238608
238533
-
Ala
CGC
[ENA]
¡û
>W1810000973
BEWU01000023
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
8279
8204
-
Ala
CGC
[ENA]
¡û
>W1810693176
QLLC01000033
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
24766
24841
+
Ala
CGC
[ENA]
¡û
>W10109862
ADBM01000015
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
45906
45831
-
Ala
CGC
[ENA]
¡û
>C10102232
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
244870
244795
-
Ala
CGC
[Ensembl]
¡û
>W11112299
ADBM01000015
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
45906
45831
-
Ala
CGC
[ENA]
¡û
>W1511489456
JWSY01000003
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
203554
203629
+
Ala
CGC
[ENA]
¡û
>W1511547867
JZRG01000006
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
83
8
-
Ala
CGC
[ENA]
¡û
>W1511596064
LBNT01000009
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
66142
66067
-
Ala
CGC
[ENA]
¡û
>C161047027
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
602997
603072
+
Ala
CGC
[Ensembl]
¡û
>C161089120
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
2459583
2459508
-
Ala
CGC
[Ensembl]
¡û
>C161089819
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
2422871
2422946
+
Ala
CGC
[Ensembl]
¡û
>W1610649154
LJHU01000013
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
31748
31673
-
Ala
CGC
[ENA]
¡û
>W1610724346
LMEB01000007
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
141390
141465
+
Ala
CGC
[ENA]
¡û
>W1610726188
LMFL01000010
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
77156
77231
+
Ala
CGC
[ENA]
¡û
>W1610726192
LMFL01000012
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
578476
578401
-
Ala
CGC
[ENA]
¡û
>W1610727878
LMGT01000001
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
173199
173124
-
Ala
CGC
[ENA]
¡û
>W1610736187
LMNC01000004
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
202850
202925
+
Ala
CGC
[ENA]
¡û
>W1610738449
LMOY01000008
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
213736
213811
+
Ala
CGC
[ENA]
¡û
>W1610739634
LMPZ01000001
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
532532
532607
+
Ala
CGC
[ENA]
¡û
>W1710084634
BDMM01000005
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
136496
136421
-
Ala
CGC
[ENA]
¡û
>W1710527045
FNKT01000003
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
136310
136235
-
Ala
CGC
[ENA]
¡û
>W1710576173
FOZV01000001
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
272149
272074
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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