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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454432 (34 seq.)
>W1710785363
LJHU01000041
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
34956
35031
+
Phe
GAA
[ENA]
¡û
>W1711408008
MGLN01000137
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
2682
2757
+
Phe
GAA
[ENA]
¡û
>W1711501735
MKRY01000209
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
538
613
+
Phe
GAA
[ENA]
¡û
>W1711718128
MTHE01000023
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
6263
6338
+
Phe
GAA
[ENA]
¡û
>W1712106188
NIVP01000018
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
40237
40312
+
Phe
GAA
[ENA]
¡û
>W131218248
ATXN01000002
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
756323
756248
-
Phe
GAA
[ENA]
¡û
>W141043023
AMFA01000127
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
17997
17922
-
Phe
GAA
[ENA]
¡û
>WENV181223445
OFDC01016975
[OFDC] hot springs metagenome; Water
710
635
-
Phe
GAA
[ENA]
¢þ
>WENV181227164
OFDN01002613
[OFDN] hot springs metagenome; Water
8975
9050
+
Phe
GAA
[ENA]
¢þ
>WENV181402270
OFTY01000400
[OFTY] sludge metagenome; sludge
18623
18548
-
Phe
GAA
[ENA]
¢þ
>WENV183727715
PJTP01000098
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
59042
59117
+
Phe
GAA
[ENA]
¢þ
>WENV183728449
PJTQ01000057
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
18036
17961
-
Phe
GAA
[ENA]
¢þ
>WENV183730943
PJTS01002332
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
801
726
-
Phe
GAA
[ENA]
¢þ
>WENV183733319
PJTY01001013
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
7803
7878
+
Phe
GAA
[ENA]
¢þ
>WENV183735432
PJUB01000004
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
432163
432238
+
Phe
GAA
[ENA]
¢þ
>WENV183739001
PJUE01000853
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
11160
11235
+
Phe
GAA
[ENA]
¢þ
>WENV183740361
PJUF01001424
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
5827
5752
-
Phe
GAA
[ENA]
¢þ
>WENV170193405
CEPH01077910
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
321
396
+
Phe
GAA
[ENA]
¢þ
>WENV170657268
JTFO01114778
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
256
181
-
Phe
GAA
[ENA]
¢þ
>WENV170838384
MDSZ01166767
[MDSZ] marine metagenome; seawater
92751
92676
-
Phe
GAA
[ENA]
¢þ
>C191093993
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2071739
2071814
+
Phe
GAA
-
¡û
>C191134424
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
1799846
1799921
+
Phe
GAA
-
¡û
>C191157368
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
478032
478107
+
Phe
GAA
-
¡û
>C191220443
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
2078563
2078488
-
Phe
GAA
-
¡û
>W141551942
JHOF01000026
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
146753
146828
+
Phe
GAA
[ENA]
¡û
>W141731229
JNIX01000009
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
452631
452556
-
Phe
GAA
[ENA]
¡û
>W1910182701
BJNC01000031
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
6456
6531
+
Phe
GAA
[ENA]
¡û
>W1911738136
QUOQ01000002
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
530158
530083
-
Phe
GAA
[ENA]
¡û
>W1911760350
QWTZ01000006
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
17366
17291
-
Phe
GAA
[ENA]
¡û
>W11123418
ADUI01000075
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
5829
5904
+
Phe
GAA
[ENA]
¡û
>W1511596057
LBNT01000008
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
43893
43968
+
Phe
GAA
[ENA]
¡û
>C161047058
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2691543
2691468
-
Phe
GAA
[Ensembl]
¡û
>C161089831
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
1661350
1661275
-
Phe
GAA
[Ensembl]
¡û
>W1610649169
LJHU01000041
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
34956
35031
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK