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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454434 (59 seq.)
>W1710861978
LMEB01000001
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
517882
517807
-
Ala
GGC
[ENA]
¡û
>W1710873818
LMNC01000001
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
60384
60309
-
Ala
GGC
[ENA]
¡û
>W1710876094
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
54618
54543
-
Ala
GGC
[ENA]
¡û
>W1711407950
MGLI01000060
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
1895
1970
+
Ala
GGC
[ENA]
¡û
>W131052414
AMYY01000003
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
58757
58682
-
Ala
GGC
[ENA]
¡û
>W131218276
ATXN01000005
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
118266
118191
-
Ala
GGC
[ENA]
¡û
>W131218277
ATXN01000005
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
118099
118024
-
Ala
GGC
[ENA]
¡û
>W141043027
AMFA01000144
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
49250
49325
+
Ala
GGC
[ENA]
¡û
>W141043028
AMFA01000144
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
49415
49490
+
Ala
GGC
[ENA]
¡û
>W08010850
ABRU01000057
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
5792
5867
+
Ala
GGC
[ENA]
¡û
>WENV181223477
OFDC01020318
[OFDC] hot springs metagenome; Water
108
33
-
Ala
GGC
[ENA]
¢þ
>WENV181227355
OFDN01008068
[OFDN] hot springs metagenome; Water
111
36
-
Ala
GGC
[ENA]
¢þ
>WENV181384326
OFRI01000182
[OFRI] wastewater metagenome; Exp Tend VB 90WW
16797
16872
+
Ala
GGC
[ENA]
¢þ
>WENV183727610
PJTP01000033
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
114442
114517
+
Ala
GGC
[ENA]
¢þ
>WENV183727611
PJTP01000033
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
114607
114682
+
Ala
GGC
[ENA]
¢þ
>WENV183728539
PJTQ01000118
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
17808
17883
+
Ala
GGC
[ENA]
¢þ
>WENV183728540
PJTQ01000118
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
17973
18048
+
Ala
GGC
[ENA]
¢þ
>WENV170012061
APMI01115831
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
399
324
-
Ala
GGC
[ENA]
¢þ
>WENV170192803
CEPG01012724
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
905
980
+
Ala
GGC
[ENA]
¢þ
>WENV170200967
CEPP01020237
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
15414
15489
+
Ala
GGC
[ENA]
¢þ
>WENV170784159
MCHG01000054
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
59397
59322
-
Ala
GGC
[ENA]
¢þ
>WENV170784160
MCHG01000054
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
59235
59160
-
Ala
GGC
[ENA]
¢þ
>WENV170831550
MDSZ01046169
[MDSZ] marine metagenome; seawater
6779
6704
-
Ala
GGC
[ENA]
¢þ
>C181056225
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
959728
959803
+
Ala
GGC
-
¡û
>C191157384
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
1926858
1926933
+
Ala
GGC
-
¡û
>C191157385
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
1927025
1927100
+
Ala
GGC
-
¡û
>C191189125
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
2873618
2873693
+
Ala
GGC
-
¡û
>W141551935
JHOF01000019
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
150
225
+
Ala
GGC
[ENA]
¡û
>W141551939
JHOF01000023
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
185471
185546
+
Ala
GGC
[ENA]
¡û
>W141712437
JMQR01000019
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
25956
26031
+
Ala
GGC
[ENA]
¡û
>W1910374352
FUIE01000084
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
30418
30343
-
Ala
GGC
[ENA]
¡û
>W1910374353
FUIE01000084
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
30250
30175
-
Ala
GGC
[ENA]
¡û
>W1910725214
MGLJ01000111
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
1878
1953
+
Ala
GGC
[ENA]
¡û
>W1911566742
PCPB01000004
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
170750
170825
+
Ala
GGC
[ENA]
¡û
>W1911566743
PCPB01000004
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
170906
170981
+
Ala
GGC
[ENA]
¡û
>W1911566950
PCPF01000005
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
137497
137572
+
Ala
GGC
[ENA]
¡û
>W1911566951
PCPF01000005
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
137653
137728
+
Ala
GGC
[ENA]
¡û
>W1911567218
PCPK01000029
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
17454
17529
+
Ala
GGC
[ENA]
¡û
>W1911567219
PCPK01000029
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
17610
17685
+
Ala
GGC
[ENA]
¡û
>W1911567282
PCPM01000005
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
22206
22131
-
Ala
GGC
[ENA]
¡û
>W1911567283
PCPM01000005
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
22050
21975
-
Ala
GGC
[ENA]
¡û
>W1911567401
PCPO01000011
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
22220
22145
-
Ala
GGC
[ENA]
¡û
>W1911567402
PCPO01000011
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
22064
21989
-
Ala
GGC
[ENA]
¡û
>W1911737831
QTTA01000001
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
98537
98612
+
Ala
GGC
[ENA]
¡û
>W1911760357
QWTZ01000012
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
20862
20787
-
Ala
GGC
[ENA]
¡û
>W1911760358
QWTZ01000012
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
20695
20620
-
Ala
GGC
[ENA]
¡û
>W1810693137
QLLC01000001
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
181553
181628
+
Ala
GGC
[ENA]
¡û
>W1810693138
QLLC01000001
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
181709
181784
+
Ala
GGC
[ENA]
¡û
>C161047069
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
1029705
1029630
-
Ala
GGC
[Ensembl]
¡û
>C161089107
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
2197280
2197355
+
Ala
GGC
[Ensembl]
¡û
>C161089847
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
149617
149542
-
Ala
GGC
[Ensembl]
¡û
>C161089848
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
149450
149375
-
Ala
GGC
[Ensembl]
¡û
>W1610074209
BCWM01000002
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
278667
278742
+
Ala
GGC
[ENA]
¡û
>W1610724324
LMEB01000001
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
517882
517807
-
Ala
GGC
[ENA]
¡û
>W1610736164
LMNC01000001
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
60384
60309
-
Ala
GGC
[ENA]
¡û
>W1610738440
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
54618
54543
-
Ala
GGC
[ENA]
¡û
>W1710071327
BCWM01000002
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
278667
278742
+
Ala
GGC
[ENA]
¡û
>W1710084636
BDMM01000006
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
55720
55645
-
Ala
GGC
[ENA]
¡û
>W1710527025
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
1468697
1468772
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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