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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45451 (76 seq.)
>W1710860945
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
1088495
1088582
+
Ser
GGA
[ENA]
¡û
>W1710863002
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
765622
765535
-
Ser
GGA
[ENA]
¡û
>W1710863764
LMFJ01000003
Actinomycetota
Aeromicrobium sp. Root495 [LMFJ]
41041
41128
+
Ser
GGA
[ENA]
¡û
>W1710867965
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
2684653
2684740
+
Ser
GGA
[ENA]
¡û
>W1710872663
LMMD01000015
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
470603
470688
+
Ser
GGA
[ENA]
¡û
>W1710873633
LMMY01000009
Actinomycetota
Aeromicrobium sp. Leaf272 [LMMY]
465388
465475
+
Ser
GGA
[ENA]
¡û
>W1710874208
LMNK01000002
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
712947
712862
-
Ser
GGA
[ENA]
¡û
>W1710874309
LMNM01000001
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
773695
773608
-
Ser
GGA
[ENA]
¡û
>W1710879916
LMRZ01000001
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
867901
867988
+
Ser
GGA
[ENA]
¡û
>W1710880069
LMSC01000006
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
321148
321061
-
Ser
GGA
[ENA]
¡û
>W1711125357
LUNF01000146
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
6517
6432
-
Ser
GGA
[ENA]
¡û
>W1711125386
LUNG01000022
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
75121
75206
+
Ser
GGA
[ENA]
¡û
>W1711125429
LUNH01000014
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
14163
14078
-
Ser
GGA
[ENA]
¡û
>W1711125472
LUNI01000007
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
75236
75321
+
Ser
GGA
[ENA]
¡û
>W1711125522
LUNJ01000014
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
75179
75264
+
Ser
GGA
[ENA]
¡û
>W1711430440
MIJB01000003
Actinomycetota
Aeromicrobium sp. PE09-221 [MIJB]
16946
16861
-
Ser
GGA
[ENA]
¡û
>C171022232
CP013290
Actinomycetota
Janibacter indicus YFY001 [CP013290]
2765711
2765624
-
Ser
GGA
-
¡û
>WENV180331417
OBLA01041203
[OBLA] soil metagenome; Alaskan Permafrost
131
44
-
Ser
GGA
[ENA]
¢þ
>W141039307
ALWX01000043
Actinomycetota
Janibacter hoylei PVAS-1 [ALWX]
3445
3358
-
Ser
GGA
[ENA]
¡û
>W141091653
AUZE01000019
Actinomycetota
actinobacterium LLX17 [AUZE]
33331
33244
-
Ser
GGA
[ENA]
¡û
>WENV181189310
OEOF01022288
[OEOF] activated sludge metagenome; Activated Sludge
52
139
+
Ser
GGA
[ENA]
¢þ
>WENV183092675
OLLI01001170
[OLLI] soil metagenome; soil
1103
1016
-
Ser
GGA
[ENA]
¢þ
>WENV170010890
APMI01033551
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
887
974
+
Ser
GGA
[ENA]
¢þ
>WENV170728979
LULF01003898
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
1074
989
-
Ser
GGA
[ENA]
¢þ
>WENV170729633
LULG01000041
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
14163
14078
-
Ser
GGA
[ENA]
¢þ
>WENV170732487
LULJ01000031
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
75121
75206
+
Ser
GGA
[ENA]
¢þ
>WENV170735846
LULL01017101
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
846
931
+
Ser
GGA
[ENA]
¢þ
>WENV170736295
LULM01000799
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
6517
6432
-
Ser
GGA
[ENA]
¢þ
>WENV170739051
LULP01016936
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
313
398
+
Ser
GGA
[ENA]
¢þ
>WENV170759033
LUMS01001292
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
4580
4665
+
Ser
GGA
[ENA]
¢þ
>WENV170759599
LUMT01000027
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
75236
75321
+
Ser
GGA
[ENA]
¢þ
>WENV170761342
LUMV01000030
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
75179
75264
+
Ser
GGA
[ENA]
¢þ
>WENV170762023
LUMW01000493
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
1139
1054
-
Ser
GGA
[ENA]
¢þ
>WENV170973232
MTKY01021060
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1114
1027
-
Ser
GGA
[ENA]
¢þ
>WENV170973940
MTKY01051935
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5356
5443
+
Ser
GGA
[ENA]
¢þ
>WENV170979402
MTKZ01088720
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1695
1782
+
Ser
GGA
[ENA]
¢þ
>C181144047
CP026952
Actinomycetota
Aeromicrobium chenweiae 592 [CP026952]
254826
254739
-
Ser
GGA
-
¡û
>C191051484
CP027482
Actinomycetota
Aeromicrobium sp. A1-2 [CP027482]
2960392
2960479
+
Ser
GGA
-
¡û
>C191147696
CP036164
Actinomycetota
Janibacter limosus P3-3-X1 [CP036164]
239019
239106
+
Ser
GGA
-
¡û
>W09127762
ACLF01000389
Actinomycetota
Aeromicrobium marinum DSM 15272 [ACLF]
569
482
-
Ser
GGA
[ENA]
¡û
>W1911584642
PIPF01000009
Actinomycetota
Janibacter hoylei PVAS-1 [PIPF]
14546
14459
-
Ser
GGA
[ENA]
¡û
>W1911693706
QLVF01000303
Actinomycetota
Aeromicrobium lacus CPCC 204604 [QLVF]
1938
2025
+
Ser
GGA
[ENA]
¡û
>W1810364604
PVTJ01000002
Actinomycetota
Glycomyces artemisiae CGMCC 4.7067 [PVTJ]
650499
650412
-
Ser
GGA
[ENA]
¡û
>W1810588377
QFRW01000280
Actinomycetota
Glycomyces dulcitolivorans SJ-25 [QFRW]
5552
5465
-
Ser
GGA
[ENA]
¡û
>W1810675434
QKKY01000303
Actinomycetota
Aeromicrobium sp. IBM16_104W [QKKY]
1938
2025
+
Ser
GGA
[ENA]
¡û
>W1810701944
QMFW01000266
Actinomycetota
Janibacter anophelis TNDT5 [QMFW]
6062
6149
+
Ser
GGA
[ENA]
¡û
>W1810870274
QUBR01000001
Actinomycetota
Aeromicrobium endophyticum M2KJ-4 [QUBR]
863202
863289
+
Ser
GGA
[ENA]
¡û
>C151077133
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
4982070
4981983
-
Ser
GGA
-
¡û
>C161036416
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
293029
292944
-
Ser
GGA
[Ensembl]
¡û
>W1610051254
BBGR01000708
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
350
437
+
Ser
GGA
[ENA]
¡û
>W1610069621
BCSQ01000018
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
27326
27239
-
Ser
GGA
[ENA]
¡û
>W1610069719
BCSS01000012
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
55868
55955
+
Ser
GGA
[ENA]
¡û
>W1610072324
BCUV01000009
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
5915
6002
+
Ser
GGA
[ENA]
¡û
>W1610078172
BDAR01000011
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
224032
224119
+
Ser
GGA
[ENA]
¡û
>W1610723291
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
1088495
1088582
+
Ser
GGA
[ENA]
¡û
>W1610725348
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
765622
765535
-
Ser
GGA
[ENA]
¡û
>W1610726110
LMFJ01000003
Actinomycetota
Aeromicrobium sp. Root495 [LMFJ]
41041
41128
+
Ser
GGA
[ENA]
¡û
>W1610730311
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
2684653
2684740
+
Ser
GGA
[ENA]
¡û
>W1610735009
LMMD01000015
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
470603
470688
+
Ser
GGA
[ENA]
¡û
>W1610735979
LMMY01000009
Actinomycetota
Aeromicrobium sp. Leaf272 [LMMY]
465388
465475
+
Ser
GGA
[ENA]
¡û
>W1610736554
LMNK01000002
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
712947
712862
-
Ser
GGA
[ENA]
¡û
>W1610736655
LMNM01000001
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
773695
773608
-
Ser
GGA
[ENA]
¡û
>W1610742262
LMRZ01000001
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
867901
867988
+
Ser
GGA
[ENA]
¡û
>W1610742415
LMSC01000006
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
321148
321061
-
Ser
GGA
[ENA]
¡û
>W1610936290
LUNF01000146
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
6517
6432
-
Ser
GGA
[ENA]
¡û
>W1610936319
LUNG01000022
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
75121
75206
+
Ser
GGA
[ENA]
¡û
>W1610936362
LUNH01000014
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
14163
14078
-
Ser
GGA
[ENA]
¡û
>W1610936405
LUNI01000007
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
75236
75321
+
Ser
GGA
[ENA]
¡û
>W1610936455
LUNJ01000014
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
75179
75264
+
Ser
GGA
[ENA]
¡û
>W1710047653
BBGR01000708
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
350
437
+
Ser
GGA
[ENA]
¡û
>W1710066994
BCSQ01000018
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
27326
27239
-
Ser
GGA
[ENA]
¡û
>W1710067092
BCSS01000012
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
55868
55955
+
Ser
GGA
[ENA]
¡û
>W1710069526
BCUV01000009
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
5915
6002
+
Ser
GGA
[ENA]
¡û
>W1710076731
BDAR01000011
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
224032
224119
+
Ser
GGA
[ENA]
¡û
>W1710521226
FNGF01000005
Actinomycetota
Glycomyces sambucus [FNGF]
202593
202506
-
Ser
GGA
[ENA]
¡û
>W1710606123
FWXN01000015
Actinomycetota
Janibacter indicus [FWXN]
22480
22393
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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