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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454522 (118 seq.)
>W1710860211
LMCS01000001
Actinomycetota
Microbacterium sp. Root322 [LMCS]
260562
260637
+
Asn
GTT
[ENA]
¡û
>W1710863960
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
335084
335159
+
Asn
GTT
[ENA]
¡û
>W1710864179
LMFR01000005
Actinomycetota
Microbacterium sp. Root53 [LMFR]
53625
53550
-
Asn
GTT
[ENA]
¡û
>W1710864524
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
2722565
2722490
-
Asn
GTT
[ENA]
¡û
>W1710868849
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
1049649
1049574
-
Asn
GTT
[ENA]
¡û
>W1710875138
LMOD01000005
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
234942
235017
+
Asn
GTT
[ENA]
¡û
>W1710875908
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
244093
244168
+
Asn
GTT
[ENA]
¡û
>W1710876034
LMOW01000003
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
236304
236379
+
Asn
GTT
[ENA]
¡û
>W1710947754
LOSO01000011
Actinomycetota
Microbacterium sp. CH1 [LOSO]
293500
293575
+
Asn
GTT
[ENA]
¡û
>W1711022930
LRAD01000038
Actinomycetota
Microbacterium laevaniformans [LRAD]
97742
97667
-
Asn
GTT
[ENA]
¡û
>W1711061097
LRYC01000016
Actinomycetota
Microbacterium hominis [LRYC]
30754
30679
-
Asn
GTT
[ENA]
¡û
>W1711074800
LSJW01000041
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
33437
33362
-
Asn
GTT
[ENA]
¡û
>W1711173349
LWCU01000023
Actinomycetota
Microbacterium sp. H83 [LWCU]
31985
31910
-
Asn
GTT
[ENA]
¡û
>W1711216491
LXMD01000012
Actinomycetota
Microbacterium sediminis [LXMD]
380634
380559
-
Asn
GTT
[ENA]
¡û
>W1711463322
MJIR01000059
Actinomycetota
Microbacterium sp. AR7-10 [MJIR]
731
806
+
Asn
GTT
[ENA]
¡û
>W1711501556
MKRT01000025
Actinomycetota
Microbacterium sp. 69-10 [MKRT]
144606
144531
-
Asn
GTT
[ENA]
¡û
>W1711501601
MKRU01000095
Actinomycetota
Microbacterium sp. 69-7 [MKRU]
32700
32775
+
Asn
GTT
[ENA]
¡û
>W1711503473
MKTQ01000014
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
445769
445694
-
Asn
GTT
[ENA]
¡û
>W1711589073
MODW01000005
Actinomycetota
Microbacterium sp. LCT-H2 [MODW]
75968
75893
-
Asn
GTT
[ENA]
¡û
>W1711963149
NCTV01000036
Actinomycetota
Microbacterium sp. LEMMJ01 [NCTV]
325648
325573
-
Asn
GTT
[ENA]
¡û
>C171073931
CP018151
Actinomycetota
Microbacterium sp. 1.5R [CP018151]
2062308
2062233
-
Asn
GTT
-
¡û
>C171083232
CP018762
Actinomycetota
Microbacterium aurum KACC 15219 [CP018762]
1929914
1929989
+
Asn
GTT
-
¡û
>W131036147
AKVP01000020
Actinomycetota
Microbacterium barkeri 2011-R4 [AKVP]
85183
85108
-
Asn
GTT
[ENA]
¡û
>W131098948
AOSO01000004
Actinomycetota
Microbacterium sp. UCD-TDU [AOSO]
269459
269534
+
Asn
GTT
[ENA]
¡û
>W131204621
ATCC01000008
Actinomycetota
Microbacterium sp. oral taxon 186 oral taxon 186 str. F0373 [ATCC]
244156
244231
+
Asn
GTT
[ENA]
¡û
>W131226583
AUEM01000002
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
260014
260089
+
Asn
GTT
[ENA]
¡û
>WENV180691760
OCZS010204114
[OCZS] soil metagenome; soil
278
205
-
Asn
GTT
[ENA]
¢þ
>WENV181385295
OFRI01059564
[OFRI] wastewater metagenome; Exp Tend VB 90WW
47
122
+
Asn
GTT
[ENA]
¢þ
>W141187494
AYME01000003
Actinomycetota
Microbacterium paraoxydans DH1b [AYME]
817082
817007
-
Asn
GTT
[ENA]
¡û
>W141223234
BADB01000334
Actinomycetota
Microbacterium sp. B24 [BADB]
6377
6302
-
Asn
GTT
[ENA]
¡û
>W141289423
JARC01000042
Actinomycetota
Microbacterium sp. Cr-K29 [JARC]
97606
97681
+
Asn
GTT
[ENA]
¡û
>W141289433
JARD01000008
Actinomycetota
Microbacterium sp. Cr-K32 [JARD]
273108
273183
+
Asn
GTT
[ENA]
¡û
>W141289499
JARE01000050
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
247517
247592
+
Asn
GTT
[ENA]
¡û
>W141289526
JARF01000015
Actinomycetota
Microbacterium sp. Cr-K1W [JARF]
279695
279770
+
Asn
GTT
[ENA]
¡û
>W141291964
JAUF01000008
Actinomycetota
Microbacterium sp. MRS-1 [JAUF]
30854
30929
+
Asn
GTT
[ENA]
¡û
>WENV183728439
PJTQ01000055
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
168151
168078
-
Asn
GTT
[ENA]
¢þ
>WENV183736592
PJUC01018529
[PJUC] soil metagenome; Soil enriched on filter paper
106
181
+
Asn
GTT
[ENA]
¢þ
>WENV183737125
PJUD01000516
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1920
1993
+
Asn
GTT
[ENA]
¢þ
>WENV183740629
PJUF01004663
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3239
3312
+
Asn
GTT
[ENA]
¢þ
>C181004075
AP017975
Actinomycetota
Microbacterium sp. TPU 3598 [AP017975]
1626335
1626410
+
Asn
GTT
-
¡û
>C181115708
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
2106734
2106807
+
Asn
GTT
-
¡û
>C181153109
CP027434
Actinomycetota
Microbacterium sp. str. 'China' [CP027434]
2006538
2006463
-
Asn
GTT
-
¡û
>C181200444
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
2052311
2052236
-
Asn
GTT
-
¡û
>C191026884
CP024170
Actinomycetota
Microbacterium sp. Y-01 [CP024170]
2081759
2081684
-
Asn
GTT
-
¡û
>C191074599
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
1688747
1688822
+
Asn
GTT
-
¡û
>C191074842
CP031422
Actinomycetota
Microbacterium oxydans HG3 [CP031422]
1706032
1706107
+
Asn
GTT
-
¡û
>C191158636
CP038256
Actinomycetota
Microbacterium sediminis YLB-01 [CP038256]
1486995
1486920
-
Asn
GTT
-
¡û
>C191185984
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
2077510
2077435
-
Asn
GTT
-
¡û
>W1910182578
BJNA01000006
Actinomycetota
Microbacterium lacticum NBRC 14135 [BJNA]
26943
26870
-
Asn
GTT
[ENA]
¡û
>W1910183343
BJNQ01000004
Actinomycetota
Microbacterium liquefaciens NBRC 15037 [BJNQ]
373
298
-
Asn
GTT
[ENA]
¡û
>W1910184026
BJOG01000004
Actinomycetota
Microbacterium oxydans NBRC 15586 [BJOG]
320119
320194
+
Asn
GTT
[ENA]
¡û
>W1910211995
FMIR01000019
Actinomycetota
Microbacterium oxydans [FMIR]
428124
428049
-
Asn
GTT
[ENA]
¡û
>W1910575833
JRNY01000001
Actinomycetota
Microbacterium sediminis YLB-01 [JRNY]
380634
380559
-
Asn
GTT
[ENA]
¡û
>W1910636829
LPVV01000038
Actinomycetota
Microbacterium sp. SZ1 [LPVV]
184194
184119
-
Asn
GTT
[ENA]
¡û
>W1910832069
MYFP01000043
Actinomycetota
Microbacterium sp. MEC084 [MYFP]
26599
26674
+
Asn
GTT
[ENA]
¡û
>W1911566334
PCOT01000005
Actinomycetota
Microbacterium sp. MYb72 [PCOT]
29116
29191
+
Asn
GTT
[ENA]
¡û
>W1911566468
PCOV01000006
Actinomycetota
Microbacterium sp. MYb66 [PCOV]
30688
30613
-
Asn
GTT
[ENA]
¡û
>W1911566497
PCOW01000005
Actinomycetota
Microbacterium sp. MYb64 [PCOW]
174220
174295
+
Asn
GTT
[ENA]
¡û
>W1911566602
PCOY01000006
Actinomycetota
Microbacterium sp. MYb62 [PCOY]
30091
30166
+
Asn
GTT
[ENA]
¡û
>W1911566699
PCPA01000004
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
231969
232044
+
Asn
GTT
[ENA]
¡û
>W1911566830
PCPD01000003
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
53732
53657
-
Asn
GTT
[ENA]
¡û
>W1911566992
PCPG01000001
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
989491
989416
-
Asn
GTT
[ENA]
¡û
>W1911567106
PCPI01000002
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
231967
232042
+
Asn
GTT
[ENA]
¡û
>W1911567137
PCPJ01000001
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
231957
232032
+
Asn
GTT
[ENA]
¡û
>W1911567241
PCPL01000002
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
98963
98888
-
Asn
GTT
[ENA]
¡û
>W1911567516
PCPQ01000002
Actinomycetota
Microbacterium sp. MYb24 [PCPQ]
99012
98937
-
Asn
GTT
[ENA]
¡û
>W1911594737
PNFU01000007
Actinomycetota
Microbacterium sp. UMB0228 [PNFU]
113420
113345
-
Asn
GTT
[ENA]
¡û
>W1810064574
PDVO02000009
Actinomycetota
Microbacterium esteraromaticum MM1 [PDVO]
7281
7356
+
Asn
GTT
[ENA]
¡û
>W1810091058
PGGU01000007
Actinomycetota
Microbacterium aurantiacum Sa12 [PGGU]
150
75
-
Asn
GTT
[ENA]
¡û
>W1810158838
PJCV01000001
Actinomycetota
Actinomycetales bacterium SN12 [PJCV]
415798
415725
-
Asn
GTT
[ENA]
¡û
>W1810538514
QDFV01000008
Actinomycetota
Microbacterium sp. TPD7012 [QDFV]
6600
6525
-
Asn
GTT
[ENA]
¡û
>W1810724669
QOAY01000175
Actinomycetota
Microbacterium sp. H6 [QOAY]
8112
8037
-
Asn
GTT
[ENA]
¡û
>C151093267
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
1109262
1109187
-
Asn
GTT
-
¡û
>W1510085904
CDWI01000014
Actinomycetota
Microbacterium sp. 3J1 [CDWI]
176799
176724
-
Asn
GTT
[ENA]
¡û
>W1511348021
JRKC01000009
Actinomycetota
Microbacterium sp. ZOR0019 [JRKC]
77181
77256
+
Asn
GTT
[ENA]
¡û
>W1511489520
JWSZ01000012
Actinomycetota
Microbacterium hominis TPW29 [JWSZ]
43482
43557
+
Asn
GTT
[ENA]
¡û
>W1511509266
JXQX01000007
Actinomycetota
Microbacterium sp. MEJ108Y [JXQX]
80958
80883
-
Asn
GTT
[ENA]
¡û
>W1511510213
JXRU01000025
Actinomycetota
Microbacterium sp. SA39 [JXRU]
69726
69801
+
Asn
GTT
[ENA]
¡û
>W1511528691
JYIT01000085
Actinomycetota
Microbacterium azadirachtae DSM 23848 [JYIT]
252976
253051
+
Asn
GTT
[ENA]
¡û
>W1511528716
JYIU01000044
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
76447
76372
-
Asn
GTT
[ENA]
¡û
>W1511528765
JYIV01000029
Actinomycetota
Microbacterium oxydans BEL163 [JYIV]
160307
160232
-
Asn
GTT
[ENA]
¡û
>W1511528804
JYIW01000026
Actinomycetota
Microbacterium oxydans BEL4b [JYIW]
236062
236137
+
Asn
GTT
[ENA]
¡û
>W1511528856
JYIX01000038
Actinomycetota
Microbacterium azadirachtae ARN176 [JYIX]
254035
254110
+
Asn
GTT
[ENA]
¡û
>W1511529029
JYJB01000010
Actinomycetota
Microbacterium hydrocarbonoxydans SA35 [JYJB]
265467
265542
+
Asn
GTT
[ENA]
¡û
>W1511588887
LBCR01000033
Actinomycetota
Microbacterium sp. Ag1 [LBCR]
108695
108620
-
Asn
GTT
[ENA]
¡û
>C161061358
CP013859
Actinomycetota
Microbacterium sp. XT11 [CP013859]
2840231
2840156
-
Asn
GTT
[Ensembl]
¡û
>C161070826
CP014313
Actinomycetota
Microbacterium sp. PAMC 28756 HSR44 [CP014313]
3324824
3324749
-
Asn
GTT
[Ensembl]
¡û
>W121061226
AJGR01000116
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
63580
63655
+
Asn
GTT
[ENA]
¡û
>W1610068283
BCRF01000002
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
73160
73085
-
Asn
GTT
[ENA]
¡û
>W1610068377
BCRH01000025
Actinomycetota
Microbacterium paraoxydans NBRC 103076 [BCRH]
32560
32485
-
Asn
GTT
[ENA]
¡û
>W1610073990
BCWI01000001
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
435155
435080
-
Asn
GTT
[ENA]
¡û
>W1610081049
BDCY01000002
Actinomycetota
Microbacterium sp. HM58-2 [BDCY]
1581304
1581229
-
Asn
GTT
[ENA]
¡û
>W1610590718
LDRQ01000013
Actinomycetota
Microbacterium oxydans [LDRQ]
1209
1134
-
Asn
GTT
[ENA]
¡û
>W1610722557
LMCS01000001
Actinomycetota
Microbacterium sp. Root322 [LMCS]
260562
260637
+
Asn
GTT
[ENA]
¡û
>W1610726306
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
335084
335159
+
Asn
GTT
[ENA]
¡û
>W1610726525
LMFR01000005
Actinomycetota
Microbacterium sp. Root53 [LMFR]
53625
53550
-
Asn
GTT
[ENA]
¡û
>W1610726870
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
2722565
2722490
-
Asn
GTT
[ENA]
¡û
>W1610731195
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
1049649
1049574
-
Asn
GTT
[ENA]
¡û
>W1610737484
LMOD01000005
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
234942
235017
+
Asn
GTT
[ENA]
¡û
>W1610738254
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
244093
244168
+
Asn
GTT
[ENA]
¡û
>W1610738380
LMOW01000003
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
236304
236379
+
Asn
GTT
[ENA]
¡û
>W1610803756
LOSO01000011
Actinomycetota
Microbacterium sp. CH1 [LOSO]
293500
293575
+
Asn
GTT
[ENA]
¡û
>W1610871175
LRAD01000038
Actinomycetota
Microbacterium laevaniformans [LRAD]
97742
97667
-
Asn
GTT
[ENA]
¡û
>W1610902074
LRYC01000016
Actinomycetota
Microbacterium hominis [LRYC]
30754
30679
-
Asn
GTT
[ENA]
¡û
>W1610914105
LSJW01000041
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
33437
33362
-
Asn
GTT
[ENA]
¡û
>W1610981954
LWCU01000023
Actinomycetota
Microbacterium sp. H83 [LWCU]
31985
31910
-
Asn
GTT
[ENA]
¡û
>W1611001399
LXMD01000012
Actinomycetota
Microbacterium sediminis [LXMD]
380634
380559
-
Asn
GTT
[ENA]
¡û
>W1710065656
BCRF01000002
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
73160
73085
-
Asn
GTT
[ENA]
¡û
>W1710065750
BCRH01000025
Actinomycetota
Microbacterium paraoxydans NBRC 103076 [BCRH]
32560
32485
-
Asn
GTT
[ENA]
¡û
>W1710071108
BCWI01000001
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
435155
435080
-
Asn
GTT
[ENA]
¡û
>W1710079700
BDCY01000002
Actinomycetota
Microbacterium sp. HM58-2 [BDCY]
1581304
1581229
-
Asn
GTT
[ENA]
¡û
>W1710521748
FNGQ01000001
Actinomycetota
Microbacterium azadirachtae cl140 [FNGQ]
384301
384226
-
Asn
GTT
[ENA]
¡û
>W1710535575
FNSQ01000005
Actinomycetota
Microbacterium hydrocarbonoxydans [FNSQ]
1743202
1743277
+
Asn
GTT
[ENA]
¡û
>W1710538397
FNUN01000001
Actinomycetota
Microbacterium azadirachtae cl12a [FNUN]
384031
383956
-
Asn
GTT
[ENA]
¡û
>W1710538561
FNUQ01000001
Actinomycetota
Microbacterium azadirachtae cl152 [FNUQ]
384765
384690
-
Asn
GTT
[ENA]
¡û
>W1710574967
FOYR01000001
Actinomycetota
Microbacterium azadirachtae cl127 [FOYR]
393146
393073
-
Asn
GTT
[ENA]
¡û
>W1710599970
FTPO01000001
Actinomycetota
Microbacterium sp. RU33B [FTPO]
1353942
1354015
+
Asn
GTT
[ENA]
¡û
>W1710709998
LDRQ01000013
Actinomycetota
Microbacterium oxydans [LDRQ]
1209
1134
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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