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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454636 (53 seq.)
>W1710871504
LMLI01000020
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
33332
33257
-
Phe
GAA
[ENA]
¡û
>W1711680212
MRWD01000056
Gammaproteobacteria
Rouxiella silvae [MRWD]
11973
11898
-
Phe
GAA
[ENA]
¡û
>W1711680217
MRWD01000075
Gammaproteobacteria
Rouxiella silvae [MRWD]
3901
3826
-
Phe
GAA
[ENA]
¡û
>WENV170707648
LNAP01028339
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2205
2130
-
Phe
GAA
[ENA]
¢þ
>C181035750
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
2761333
2761408
+
Phe
GAA
-
¡û
>C181035754
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
3205381
3205456
+
Phe
GAA
-
¡û
>C191087407
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
3891023
3891098
+
Phe
GAA
-
¡û
>C191087448
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
413744
413669
-
Phe
GAA
-
¡û
>C191126444
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
3812650
3812725
+
Phe
GAA
-
¡û
>C191126485
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
427858
427783
-
Phe
GAA
-
¡û
>C191126520
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
3813347
3813422
+
Phe
GAA
-
¡û
>C191126561
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
428555
428480
-
Phe
GAA
-
¡û
>C191126597
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
3929180
3929255
+
Phe
GAA
-
¡û
>C191126638
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
421755
421680
-
Phe
GAA
-
¡û
>C191151747
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
1621679
1621754
+
Phe
GAA
-
¡û
>C191151751
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
2132625
2132700
+
Phe
GAA
-
¡û
>W141710731
JMPO01000121
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
87908
87983
+
Phe
GAA
[ENA]
¡û
>W141710749
JMPO01000135
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
146795
146870
+
Phe
GAA
[ENA]
¡û
>W141816174
JQJR01000006
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
35363
35438
+
Phe
GAA
[ENA]
¡û
>W141816181
JQJR01000009
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
310388
310463
+
Phe
GAA
[ENA]
¡û
>W1910584865
JYDE01000002
Gammaproteobacteria
Rahnella inusitata DSM 30078 [JYDE]
86395
86320
-
Phe
GAA
[ENA]
¡û
>W1910584890
JYDE01000022
Gammaproteobacteria
Rahnella inusitata DSM 30078 [JYDE]
12820
12745
-
Phe
GAA
[ENA]
¡û
>W1910584908
JYDF01000007
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
95
20
-
Phe
GAA
[ENA]
¡û
>W1910584920
JYDF01000030
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
15446
15371
-
Phe
GAA
[ENA]
¡û
>W1910655797
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
3031821
3031896
+
Phe
GAA
[ENA]
¡û
>W1910655815
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
4451137
4451062
-
Phe
GAA
[ENA]
¡û
>W1910696175
MEHU01000021
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
321334
321409
+
Phe
GAA
[ENA]
¡û
>W1910696199
MEHU01000035
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
1286541
1286616
+
Phe
GAA
[ENA]
¡û
>W1911239268
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
282020
282095
+
Phe
GAA
[ENA]
¡û
>W1911239332
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
1689446
1689371
-
Phe
GAA
[ENA]
¡û
>W1911686131
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
4111045
4111120
+
Phe
GAA
[ENA]
¡û
>W1911686167
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
779371
779296
-
Phe
GAA
[ENA]
¡û
>W1911693599
QLTF01000001
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
147206
147281
+
Phe
GAA
[ENA]
¡û
>W1911693647
QLTF01000007
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
16002
15927
-
Phe
GAA
[ENA]
¡û
>W1911824516
QZWI01000001
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
1035411
1035486
+
Phe
GAA
[ENA]
¡û
>W1911824560
QZWI01000024
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
12978
12903
-
Phe
GAA
[ENA]
¡û
>W1810149967
PITQ01000001
Gammaproteobacteria
Rahnella sp. AA [PITQ]
610845
610770
-
Phe
GAA
[ENA]
¡û
>W1810150003
PITQ01000007
Gammaproteobacteria
Rahnella sp. AA [PITQ]
13759
13684
-
Phe
GAA
[ENA]
¡û
>W1810239952
PPSR01000052
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
28
103
+
Phe
GAA
[ENA]
¡û
>W1510461942
CQAZ01000099
Gammaproteobacteria
Yersinia pekkanenii A125KOH2 [CQAZ]
1359
1284
-
Phe
GAA
[ENA]
¡û
>W1510669209
CWJL01000014
Gammaproteobacteria
Yersinia pekkanenii type strain: CIP110230 [CWJL]
31631
31556
-
Phe
GAA
[ENA]
¡û
>W1510669224
CWJL01000024
Gammaproteobacteria
Yersinia pekkanenii type strain: CIP110230 [CWJL]
3424
3349
-
Phe
GAA
[ENA]
¡û
>C11118337
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
3861346
3861421
+
Phe
GAA
[Ensembl]
¡û
>C11118377
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
424818
424743
-
Phe
GAA
[Ensembl]
¡û
>W1511433723
JUHL01000004
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
126722
126647
-
Phe
GAA
[ENA]
¡û
>W1511433763
JUHL01000021
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
196
121
-
Phe
GAA
[ENA]
¡û
>W1511433782
JUHM01000002
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
16004
15929
-
Phe
GAA
[ENA]
¡û
>W1511433819
JUHM01000024
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
87907
87981
+
Phe
GAA
[ENA]
¡û
>C121009628
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
3873068
3873143
+
Phe
GAA
[Ensembl]
¡û
>C121009670
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
432764
432689
-
Phe
GAA
[Ensembl]
¡û
>C121012482
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
3928737
3928812
+
Phe
GAA
[Ensembl]
¡û
>C121012524
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
427339
427264
-
Phe
GAA
[Ensembl]
¡û
>W1610733850
LMLI01000020
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
33332
33257
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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