This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454638 (94 seq.)
>W1710872856
LMMI01000003
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
20365
20440
+
Asn
GTT
[ENA]
¡û
>W1710872857
LMMI01000003
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
20605
20680
+
Asn
GTT
[ENA]
¡û
>W1710872953
LMMK01000008
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
28747
28822
+
Asn
GTT
[ENA]
¡û
>W1710872987
LMML01000004
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
325186
325261
+
Asn
GTT
[ENA]
¡û
>W1710873105
LMMN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
752403
752478
+
Asn
GTT
[ENA]
¡û
>W1710873245
LMMQ01000031
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
176778
176703
-
Asn
GTT
[ENA]
¡û
>W1710873467
LMMU01000009
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
17478
17553
+
Asn
GTT
[ENA]
¡û
>W1710873468
LMMU01000009
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
17718
17793
+
Asn
GTT
[ENA]
¡û
>W1710873556
LMMW01000023
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
257174
257099
-
Asn
GTT
[ENA]
¡û
>W1710873557
LMMW01000023
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
256934
256859
-
Asn
GTT
[ENA]
¡û
>W1710873604
LMMX01000034
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
65771
65846
+
Asn
GTT
[ENA]
¡û
>W1710873605
LMMX01000034
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
66011
66086
+
Asn
GTT
[ENA]
¡û
>W1710873717
LMMZ01000041
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
16317
16242
-
Asn
GTT
[ENA]
¡û
>W1710873932
LMNE01000021
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
16364
16289
-
Asn
GTT
[ENA]
¡û
>W1710874013
LMNG01000013
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
30014
29939
-
Asn
GTT
[ENA]
¡û
>W1710874014
LMNG01000013
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
29774
29699
-
Asn
GTT
[ENA]
¡û
>W1710874158
LMNJ01000013
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
16563
16488
-
Asn
GTT
[ENA]
¡û
>W1710874246
LMNL01000009
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
16564
16489
-
Asn
GTT
[ENA]
¡û
>W1710874363
LMNN01000024
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
369159
369234
+
Asn
GTT
[ENA]
¡û
>W1710874448
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
1153057
1153132
+
Asn
GTT
[ENA]
¡û
>W1710874488
LMNQ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
220942
220867
-
Asn
GTT
[ENA]
¡û
>W1710874565
LMNS01000012
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
367423
367498
+
Asn
GTT
[ENA]
¡û
>W1710874680
LMNU01000049
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
128181
128256
+
Asn
GTT
[ENA]
¡û
>W1710878283
LMQV01000004
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
156479
156404
-
Asn
GTT
[ENA]
¡û
>W1710878534
LMRA01000015
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
20347
20422
+
Asn
GTT
[ENA]
¡û
>W1710878726
LMRE01000042
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
20623
20698
+
Asn
GTT
[ENA]
¡û
>W1710878727
LMRE01000042
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
20863
20938
+
Asn
GTT
[ENA]
¡û
>W1710879181
LMRM01000007
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
16611
16536
-
Asn
GTT
[ENA]
¡û
>W1711078668
LSNC01000030
Alphaproteobacteria
Methylorubrum populi [LSNC]
107436
107511
+
Asn
GTT
[ENA]
¡û
>W1711571770
MNAO01000360
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
2888
2813
-
Asn
GTT
[ENA]
¡û
>W131051716
AMXU01000008
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
47125
47050
-
Asn
GTT
[ENA]
¡û
>C171092172
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
1782451
1782376
-
Asn
GTT
-
¡û
>C171115182
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
1236402
1236477
+
Asn
GTT
-
¡û
>WENV180381322
OBOR01227339
[OBOR] marine metagenome; ENVO 00002227
61
136
+
Asn
GTT
[ENA]
¢þ
>W08002420
ABEX01000015
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
162651
162579
-
Asn
GTT
[ENA]
¡û
>WENV182576390
OJFX01018067
[OJFX] seawater metagenome; Sea water
56
131
+
Asn
GTT
[ENA]
¢þ
>C08006504
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
5255459
5255534
+
Asn
GTT
[Ensembl]
¡û
>C08006651
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
5611814
5611889
+
Asn
GTT
[Ensembl]
¡û
>WENV170586581
FUFK010429352
[FUFK] metagenome; unknown
83
158
+
Asn
GTT
[ENA]
¢þ
>C181000363
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
5493082
5493157
+
Asn
GTT
-
¡û
>C181175650
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
5464427
5464502
+
Asn
GTT
-
¡û
>C181227881
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
500382
500307
-
Asn
GTT
-
¡û
>W09106840
ABEC01000002
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
806009
805934
-
Asn
GTT
[ENA]
¡û
>W09107179
ABFR01000004
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
181742
181817
+
Asn
GTT
[ENA]
¡û
>C09107434
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
5534035
5534110
+
Asn
GTT
[Ensembl]
¡û
>C09107520
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
5741826
5741901
+
Asn
GTT
[Ensembl]
¡û
>C09107621
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
5307171
5307246
+
Asn
GTT
[Ensembl]
¡û
>W1810057217
PDHT01000034
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
26828
26903
+
Asn
GTT
[ENA]
¡û
>W1810487238
QAYK01000036
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
1559
1634
+
Asn
GTT
[ENA]
¡û
>W1810658566
QJJJ01000043
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
2935
2860
-
Asn
GTT
[ENA]
¡û
>W1810672734
QJTP01000035
Alphaproteobacteria
Methylobacterium sp. GV094 [QJTP]
1559
1634
+
Asn
GTT
[ENA]
¡û
>SRA1014337
SRR023845.94447
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
260
185
-
Asn
GTT
[SRA]
>SRA1015292
SRR023846.1653
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
172
97
-
Asn
GTT
[SRA]
>SRA1015942
SRR023846.274914
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
79
4
-
Asn
GTT
[SRA]
>SRA1016192
SRR023846.392926
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
95
20
-
Asn
GTT
[SRA]
>SRA1016354
SRR023846.461743
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
192
117
-
Asn
GTT
[SRA]
>C161004980
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
5230690
5230765
+
Asn
GTT
[Ensembl]
¡û
>W1610042962
BAZM01000264
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
682
757
+
Asn
GTT
[ENA]
¡û
>W1610043175
BAZP01000251
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
2019
1944
-
Asn
GTT
[ENA]
¡û
>W121010681
AGJK01000089
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
18221
18296
+
Asn
GTT
[ENA]
¡û
>W1610735202
LMMI01000003
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
20365
20440
+
Asn
GTT
[ENA]
¡û
>W1610735203
LMMI01000003
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
20605
20680
+
Asn
GTT
[ENA]
¡û
>W1610735299
LMMK01000008
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
28747
28822
+
Asn
GTT
[ENA]
¡û
>W1610735333
LMML01000004
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
325186
325261
+
Asn
GTT
[ENA]
¡û
>W1610735451
LMMN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
752403
752478
+
Asn
GTT
[ENA]
¡û
>W1610735591
LMMQ01000031
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
176778
176703
-
Asn
GTT
[ENA]
¡û
>W1610735813
LMMU01000009
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
17478
17553
+
Asn
GTT
[ENA]
¡û
>W1610735814
LMMU01000009
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
17718
17793
+
Asn
GTT
[ENA]
¡û
>W1610735902
LMMW01000023
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
257174
257099
-
Asn
GTT
[ENA]
¡û
>W1610735903
LMMW01000023
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
256934
256859
-
Asn
GTT
[ENA]
¡û
>W1610735950
LMMX01000034
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
65771
65846
+
Asn
GTT
[ENA]
¡û
>W1610735951
LMMX01000034
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
66011
66086
+
Asn
GTT
[ENA]
¡û
>W1610736063
LMMZ01000041
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
16317
16242
-
Asn
GTT
[ENA]
¡û
>W1610736278
LMNE01000021
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
16364
16289
-
Asn
GTT
[ENA]
¡û
>W1610736359
LMNG01000013
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
30014
29939
-
Asn
GTT
[ENA]
¡û
>W1610736360
LMNG01000013
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
29774
29699
-
Asn
GTT
[ENA]
¡û
>W1610736504
LMNJ01000013
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
16563
16488
-
Asn
GTT
[ENA]
¡û
>W1610736592
LMNL01000009
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
16564
16489
-
Asn
GTT
[ENA]
¡û
>W1610736709
LMNN01000024
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
369159
369234
+
Asn
GTT
[ENA]
¡û
>W1610736794
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
1153057
1153132
+
Asn
GTT
[ENA]
¡û
>W1610736834
LMNQ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
220942
220867
-
Asn
GTT
[ENA]
¡û
>W1610736911
LMNS01000012
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
367423
367498
+
Asn
GTT
[ENA]
¡û
>W1610737026
LMNU01000049
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
128181
128256
+
Asn
GTT
[ENA]
¡û
>W1610740629
LMQV01000004
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
156479
156404
-
Asn
GTT
[ENA]
¡û
>W1610740880
LMRA01000015
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
20347
20422
+
Asn
GTT
[ENA]
¡û
>W1610741072
LMRE01000042
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
20623
20698
+
Asn
GTT
[ENA]
¡û
>W1610741073
LMRE01000042
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
20863
20938
+
Asn
GTT
[ENA]
¡û
>W1610741527
LMRM01000007
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
16611
16536
-
Asn
GTT
[ENA]
¡û
>W1610917578
LSNC01000030
Alphaproteobacteria
Methylorubrum populi [LSNC]
107436
107511
+
Asn
GTT
[ENA]
¡û
>W1710040122
BAZM01000264
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
682
757
+
Asn
GTT
[ENA]
¡û
>W1710040335
BAZP01000251
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
2019
1944
-
Asn
GTT
[ENA]
¡û
>W1710563202
FOPM01000029
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
15830
15905
+
Asn
GTT
[ENA]
¡û
>W1710563203
FOPM01000029
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
16056
16131
+
Asn
GTT
[ENA]
¡û
>W1710567534
FOSV01000005
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
48033
48108
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK