This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454668 (92 seq.)
>W1710860358
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
459514
459439
-
Trp
CCA
[ENA]
¡û
>W1710862346
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
644477
644552
+
Trp
CCA
[ENA]
¡û
>W1710865472
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
644446
644521
+
Trp
CCA
[ENA]
¡û
>W1710869662
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
283685
283610
-
Trp
CCA
[ENA]
¡û
>W1710872937
LMMJ01000009
Actinomycetota
Curtobacterium sp. Leaf261 [LMMJ]
303800
303727
-
Trp
CCA
[ENA]
¡û
>W1710873328
LMMR01000007
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
367191
367266
+
Trp
CCA
[ENA]
¡û
>W1710874696
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
1259443
1259370
-
Trp
CCA
[ENA]
¡û
>W1710875040
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
243804
243879
+
Trp
CCA
[ENA]
¡û
>W1710875497
LMOK01000003
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
517510
517435
-
Trp
CCA
[ENA]
¡û
>W1710876178
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
283457
283382
-
Trp
CCA
[ENA]
¡û
>W1711173297
LWCT01000006
Actinomycetota
Plantibacter sp. H53 [LWCT]
33468
33393
-
Trp
CCA
[ENA]
¡û
>W1711461512
MJGW01000001
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
237841
237916
+
Trp
CCA
[ENA]
¡û
>W1711724731
MTQL01000006
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
1277082
1277009
-
Trp
CCA
[ENA]
¡û
>W131216932
ATWH01000004
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
146504
146429
-
Trp
CCA
[ENA]
¡û
>W131242119
CAAG010000140
Actinomycetota
Tropheryma whipplei str. Dig15 [CAAG]
48425
48352
-
Trp
CCA
[ENA]
¡û
>W131242161
CAAH010000140
Actinomycetota
Tropheryma whipplei str. Endo32 [CAAH]
48436
48363
-
Trp
CCA
[ENA]
¡û
>W131242202
CAAO010000154
Actinomycetota
Tropheryma whipplei str. Slow2 [CAAO]
48431
48358
-
Trp
CCA
[ENA]
¡û
>W131249915
CAUD01000137
Actinomycetota
Tropheryma whipplei str. Neuro1 [CAUD]
48437
48364
-
Trp
CCA
[ENA]
¡û
>W131249999
CAUF01000141
Actinomycetota
Tropheryma whipplei str. Art1 [CAUF]
48427
48354
-
Trp
CCA
[ENA]
¡û
>W131250392
CAUP010000131
Actinomycetota
Tropheryma whipplei str. Dig7 [CAUP]
48432
48359
-
Trp
CCA
[ENA]
¡û
>W131250434
CAUQ010000117
Actinomycetota
Tropheryma whipplei str. Dig10 [CAUQ]
48438
48365
-
Trp
CCA
[ENA]
¡û
>W131250476
CAUR010000120
Actinomycetota
Tropheryma whipplei str. Neuro14 [CAUR]
48431
48358
-
Trp
CCA
[ENA]
¡û
>W131250518
CAUS010000120
Actinomycetota
Tropheryma whipplei str. Endo27 [CAUS]
48431
48358
-
Trp
CCA
[ENA]
¡û
>W131250560
CAUT010000112
Actinomycetota
Tropheryma whipplei str. Sali28 [CAUT]
48433
48360
-
Trp
CCA
[ENA]
¡û
>W131250602
CAUU010000139
Actinomycetota
Tropheryma whipplei str. Art29 [CAUU]
48435
48362
-
Trp
CCA
[ENA]
¡û
>W131250643
CAUV010000143
Actinomycetota
Tropheryma whipplei str. Pneumo30 [CAUV]
48432
48359
-
Trp
CCA
[ENA]
¡û
>W131250685
CAUW010000129
Actinomycetota
Tropheryma whipplei str. DigADP25 [CAUW]
48435
48362
-
Trp
CCA
[ENA]
¡û
>W131250727
CAUX010000120
Actinomycetota
Tropheryma whipplei str. Neuro20 [CAUX]
48438
48365
-
Trp
CCA
[ENA]
¡û
>W131250768
CAUY010000142
Actinomycetota
Tropheryma whipplei str. Dig9 [CAUY]
48433
48360
-
Trp
CCA
[ENA]
¡û
>W131250810
CAVA010000123
Actinomycetota
Tropheryma whipplei str. DigMusc17 [CAVA]
48434
48361
-
Trp
CCA
[ENA]
¡û
>W131250852
CAVB010000134
Actinomycetota
Tropheryma whipplei str. Bcu26 [CAVB]
48436
48363
-
Trp
CCA
[ENA]
¡û
>C025988
BX072543
Actinomycetota
Tropheryma whipplei [BX072543]
827112
827040
-
Trp
CCA
[Ensembl]
¡û
>C026040
AE014184
Actinomycetota
Tropheryma whipplei str. Twist [AE014184]
828439
828367
-
Trp
CCA
[Ensembl]
¡û
>WENV180016646
FSVR01000056
[FSVR] metagenome; soil
490
417
-
Trp
CCA
[ENA]
¢þ
>WENV180016683
FSVT01000057
[FSVT] metagenome; soil
3471
3398
-
Trp
CCA
[ENA]
¢þ
>WENV180017287
FSWR01000057
[FSWR] metagenome; soil
137774
137701
-
Trp
CCA
[ENA]
¢þ
>WENV180017364
FSWU01000162
[FSWU] metagenome; soil
4294
4367
+
Trp
CCA
[ENA]
¢þ
>WENV180018330
FSYW01000102
[FSYW] metagenome; soil
567
640
+
Trp
CCA
[ENA]
¢þ
>WENV180018364
FSYX01000422
[FSYX] metagenome; soil
281
208
-
Trp
CCA
[ENA]
¢þ
>WENV180019842
FTCP01000218
[FTCP] metagenome; soil
3460
3533
+
Trp
CCA
[ENA]
¢þ
>WENV180024071
FTIF01024284
[FTIF] metagenome; soil
913
840
-
Trp
CCA
[ENA]
¢þ
>WENV180024136
FTIF01063552
[FTIF] metagenome; soil
15841
15768
-
Trp
CCA
[ENA]
¢þ
>WENV180026332
FTIT01001743
[FTIT] metagenome; soil
9509
9436
-
Trp
CCA
[ENA]
¢þ
>WENV180026427
FTIT01171103
[FTIT] metagenome; soil
334
407
+
Trp
CCA
[ENA]
¢þ
>WENV180033928
FTKM01001840
[FTKM] metagenome; soil
3201
3274
+
Trp
CCA
[ENA]
¢þ
>WENV180304385
OBJI01017570
[OBJI] soil metagenome; soil
176
249
+
Trp
CCA
[ENA]
¢þ
>WENV180344672
OBLL01105015
[OBLL] soil metagenome; soil
46
119
+
Trp
CCA
[ENA]
¢þ
>WENV183093298
OLLX01000203
[OLLX] soil metagenome; soil
2381
2454
+
Trp
CCA
[ENA]
¢þ
>WENV183697704
OUNK010024253
[OUNK] metagenome; soil
570
643
+
Trp
CCA
[ENA]
¢þ
>C181143922
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
442292
442365
+
Trp
CCA
-
¡û
>C191011720
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
2262926
2262853
-
Trp
CCA
-
¡û
>C191101025
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
69321
69248
-
Trp
CCA
-
¡û
>C191182583
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
1107379
1107306
-
Trp
CCA
-
¡û
>W1911497874
OCST01000002
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
491604
491677
+
Trp
CCA
[ENA]
¡û
>W1911671598
QGAE01000003
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
119821
119748
-
Trp
CCA
[ENA]
¡û
>W1911681905
QKLA01000011
Actinomycetota
Curtobacterium sp. MCPF17_050 [QKLA]
86936
87009
+
Trp
CCA
[ENA]
¡û
>W1911681941
QKLB01000004
Actinomycetota
Curtobacterium sp. MCPF17_046 [QKLB]
52871
52944
+
Trp
CCA
[ENA]
¡û
>W1911682027
QKLD01000002
Actinomycetota
Curtobacterium sp. MCPF17_015 [QKLD]
221846
221919
+
Trp
CCA
[ENA]
¡û
>W1911682078
QKLI01000002
Actinomycetota
Curtobacterium sp. MCBD17_030 [QKLI]
130570
130643
+
Trp
CCA
[ENA]
¡û
>W1911682130
QKLJ01000003
Actinomycetota
Curtobacterium sp. MCBD17_023 [QKLJ]
229592
229519
-
Trp
CCA
[ENA]
¡û
>W1911682172
QKLK01000003
Actinomycetota
Curtobacterium sp. MCBD17_029 [QKLK]
228531
228458
-
Trp
CCA
[ENA]
¡û
>W1911685036
QKSD01000009
Actinomycetota
Curtobacterium sp. MCPF17_052 [QKSD]
157576
157503
-
Trp
CCA
[ENA]
¡û
>W1911685121
QKSF01000004
Actinomycetota
Curtobacterium sp. MCPF17_047 [QKSF]
190743
190670
-
Trp
CCA
[ENA]
¡û
>W1911685176
QKSG01000006
Actinomycetota
Curtobacterium sp. MCPF17_031 [QKSG]
31263
31336
+
Trp
CCA
[ENA]
¡û
>W1911685357
QKSK01000005
Actinomycetota
Curtobacterium sp. MCPF17_011 [QKSK]
189047
188974
-
Trp
CCA
[ENA]
¡û
>W1911685401
QKSL01000007
Actinomycetota
Curtobacterium sp. MCPF17_001 [QKSL]
138270
138197
-
Trp
CCA
[ENA]
¡û
>W1911685427
QKTK01000001
Actinomycetota
Curtobacterium sp. MCBD17_008 [QKTK]
152290
152217
-
Trp
CCA
[ENA]
¡û
>W1911685643
QKTO01000003
Actinomycetota
Curtobacterium sp. MCBD17_032 [QKTO]
224342
224269
-
Trp
CCA
[ENA]
¡û
>W1911685826
QKTS01000003
Actinomycetota
Curtobacterium sp. MCBD17_021 [QKTS]
222818
222745
-
Trp
CCA
[ENA]
¡û
>SRA1004029
SRR002328.104679
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
174
99
-
Trp
CCA
[SRA]
>W1810392944
PYAU01000001
Actinomycetota
Labedella gwakjiensis DSM 21548 [PYAU]
613622
613549
-
Trp
CCA
[ENA]
¡û
>W1810569064
QEFB01000018
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
39996
39923
-
Trp
CCA
[ENA]
¡û
>W1810675530
QKLF01000004
Actinomycetota
Curtobacterium sp. MCJR17_055 [QKLF]
222017
222090
+
Trp
CCA
[ENA]
¡û
>W1810675564
QKLG01000003
Actinomycetota
Curtobacterium sp. MCJR17_043 [QKLG]
224823
224750
-
Trp
CCA
[ENA]
¡û
>W1810681233
QKSR01000012
Actinomycetota
Curtobacterium sp. MCSS17_015 [QKSR]
11156
11083
-
Trp
CCA
[ENA]
¡û
>W1810681994
QKTI01000003
Actinomycetota
Curtobacterium sp. MCLR17_032 [QKTI]
197182
197109
-
Trp
CCA
[ENA]
¡û
>C161073137
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
3940791
3940718
-
Trp
CCA
[Ensembl]
¡û
>W1610722704
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
459514
459439
-
Trp
CCA
[ENA]
¡û
>W1610724692
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
644477
644552
+
Trp
CCA
[ENA]
¡û
>W1610727818
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
644446
644521
+
Trp
CCA
[ENA]
¡û
>W1610732008
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
283685
283610
-
Trp
CCA
[ENA]
¡û
>W1610735283
LMMJ01000009
Actinomycetota
Curtobacterium sp. Leaf261 [LMMJ]
303800
303727
-
Trp
CCA
[ENA]
¡û
>W1610735674
LMMR01000007
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
367191
367266
+
Trp
CCA
[ENA]
¡û
>W1610737042
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
1259443
1259370
-
Trp
CCA
[ENA]
¡û
>W1610737386
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
243804
243879
+
Trp
CCA
[ENA]
¡û
>W1610737843
LMOK01000003
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
517510
517435
-
Trp
CCA
[ENA]
¡û
>W1610738524
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
283457
283382
-
Trp
CCA
[ENA]
¡û
>W1610981902
LWCT01000006
Actinomycetota
Plantibacter sp. H53 [LWCT]
33468
33393
-
Trp
CCA
[ENA]
¡û
>W1710603979
FUZO01000002
Actinomycetota
Plantibacter cousiniae [FUZO]
459721
459796
+
Trp
CCA
[ENA]
¡û
>W1710603993
FUZP01000001
Actinomycetota
Okibacterium fritillariae [FUZP]
759342
759415
+
Trp
CCA
[ENA]
¡û
>W1710608087
FXAP01000004
Actinomycetota
Plantibacter flavus [FXAP]
468325
468250
-
Trp
CCA
[ENA]
¡û
>W1710609363
FXWJ01000005
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
235687
235762
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK