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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454671 (55 seq.)
>W1710867791
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
322146
322219
+
Lys
TTT
[ENA]
¡û
>W1710869673
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
1117565
1117640
+
Lys
TTT
[ENA]
¡û
>W1710875005
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
1166915
1166988
+
Lys
TTT
[ENA]
¡û
>W1710876189
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
1117543
1117618
+
Lys
TTT
[ENA]
¡û
>W131162268
AQYK01000002
Actinomycetota
Leifsonia sp. 109 [AQYK]
786702
786777
+
Lys
TTT
[ENA]
¡û
>W1711173319
LWCT01000048
Actinomycetota
Plantibacter sp. H53 [LWCT]
19321
19396
+
Lys
TTT
[ENA]
¡û
>W131184646
ARTB01000003
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
1020685
1020610
-
Lys
TTT
[ENA]
¡û
>W1711386897
MEFY01000002
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
1306424
1306349
-
Lys
TTT
[ENA]
¡û
>W1711461516
MJGW01000002
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
18672
18747
+
Lys
TTT
[ENA]
¡û
>W1711505311
MKVJ01000022
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
6047
5974
-
Lys
TTT
[ENA]
¡û
>W1711505552
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
1899393
1899318
-
Lys
TTT
[ENA]
¡û
>W1711961772
NCSR01000051
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
2043
2118
+
Lys
TTT
[ENA]
¡û
>C171111610
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
1117269
1117194
-
Lys
TTT
-
¡û
>WENV180016622
FSVO01000005
[FSVO] metagenome; soil
3082
3008
-
Lys
TTT
[ENA]
¢þ
>WENV180016968
FSWJ01000079
[FSWJ] metagenome; soil
6673
6747
+
Lys
TTT
[ENA]
¢þ
>WENV180018326
FSYW01000017
[FSYW] metagenome; soil
4614
4688
+
Lys
TTT
[ENA]
¢þ
>WENV180025959
FTIR01000883
[FTIR] metagenome; soil
1826
1899
+
Lys
TTT
[ENA]
¢þ
>WENV180026048
FTIR01007598
[FTIR] metagenome; soil
30
104
+
Lys
TTT
[ENA]
¢þ
>WENV180028829
FTJH01054590
[FTJH] metagenome; soil
285
211
-
Lys
TTT
[ENA]
¢þ
>WENV181222601
OFDC01000023
[OFDC] hot springs metagenome; Water
40633
40706
+
Lys
TTT
[ENA]
¢þ
>W141146501
AWVQ01000193
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
1997
1924
-
Lys
TTT
[ENA]
¡û
>C181196597
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
3299032
3299106
+
Lys
TTT
-
¡û
>C191101015
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2084805
2084730
-
Lys
TTT
-
¡û
>C191182573
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
3178133
3178058
-
Lys
TTT
-
¡û
>W1910377770
FUKR01000019
Actinomycetota
Mycetocola reblochoni REB411 [FUKR]
15301
15376
+
Lys
TTT
[ENA]
¡û
>W1911671559
QGAE01000001
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
1111790
1111865
+
Lys
TTT
[ENA]
¡û
>W1810277208
PSTQ01000007
Actinomycetota
Pseudoclavibacter sp. AY1F1 [PSTQ]
134
61
-
Lys
TTT
[ENA]
¡û
>W1810277379
PSTU01000013
Actinomycetota
Pseudoclavibacter sp. Z016 [PSTU]
128836
128762
-
Lys
TTT
[ENA]
¡û
>W1810277514
PSTX01000012
Actinomycetota
Pseudoclavibacter sp. RFBJ5 [PSTX]
254066
253992
-
Lys
TTT
[ENA]
¡û
>W1810277566
PSTY01000020
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
253996
253922
-
Lys
TTT
[ENA]
¡û
>W1810277621
PSTZ01000009
Actinomycetota
Pseudoclavibacter sp. RFBB5 [PSTZ]
7412
7339
-
Lys
TTT
[ENA]
¡û
>W1810277669
PSUA01000013
Actinomycetota
Pseudoclavibacter sp. RFBA6 [PSUA]
77877
77803
-
Lys
TTT
[ENA]
¡û
>W1810282028
PSXX01000002
Actinomycetota
Pseudoclavibacter sp. AY1H1 [PSXX]
351234
351160
-
Lys
TTT
[ENA]
¡û
>W1810282126
PSXZ01000009
Actinomycetota
Pseudoclavibacter sp. RFBJ3 [PSXZ]
254066
253992
-
Lys
TTT
[ENA]
¡û
>W1810282179
PSYA01000010
Actinomycetota
Pseudoclavibacter sp. RFBI5 [PSYA]
1394897
1394823
-
Lys
TTT
[ENA]
¡û
>W1810282233
PSYB01000012
Actinomycetota
Pseudoclavibacter sp. RFBI4 [PSYB]
253708
253634
-
Lys
TTT
[ENA]
¡û
>W1810282285
PSYC01000029
Actinomycetota
Pseudoclavibacter sp. RFBG4 [PSYC]
76896
76822
-
Lys
TTT
[ENA]
¡û
>W1810684445
QKXI01000002
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
41341
41267
-
Lys
TTT
[ENA]
¡û
>C161076851
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
1363946
1364021
+
Lys
TTT
[Ensembl]
¡û
>W1610112239
CZJS01000101
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
79345
79270
-
Lys
TTT
[ENA]
¡û
>W1610112511
CZJX01000083
Actinomycetota
Kocuria varians [CZJX]
165
240
+
Lys
TTT
[ENA]
¡û
>W1610112551
CZJY01000070
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
43913
43838
-
Lys
TTT
[ENA]
¡û
>W1610730137
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
322146
322219
+
Lys
TTT
[ENA]
¡û
>W1610732019
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
1117565
1117640
+
Lys
TTT
[ENA]
¡û
>W1610737351
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
1166915
1166988
+
Lys
TTT
[ENA]
¡û
>W1610738535
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
1117543
1117618
+
Lys
TTT
[ENA]
¡û
>W1610981924
LWCT01000048
Actinomycetota
Plantibacter sp. H53 [LWCT]
19321
19396
+
Lys
TTT
[ENA]
¡û
>W1710114943
CZJS01000101
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
79345
79270
-
Lys
TTT
[ENA]
¡û
>W1710115215
CZJX01000083
Actinomycetota
Kocuria varians [CZJX]
165
240
+
Lys
TTT
[ENA]
¡û
>W1710115255
CZJY01000070
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
43913
43838
-
Lys
TTT
[ENA]
¡û
>W1710540813
FNXD01000018
Actinomycetota
Leifsonia sp. CL154 [FNXD]
45205
45280
+
Lys
TTT
[ENA]
¡û
>W1710568289
FOTM01000019
Actinomycetota
Leifsonia sp. CL147 [FOTM]
37320
37245
-
Lys
TTT
[ENA]
¡û
>W1710603969
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
1534640
1534567
-
Lys
TTT
[ENA]
¡û
>W1710608077
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
268573
268498
-
Lys
TTT
[ENA]
¡û
>W1710609353
FXWJ01000004
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
101994
102069
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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