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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454701 (62 seq.)
>W1710797267
LJSX01000008
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
88594
88519
-
Phe
GAA
[ENA]
¡û
>W1710815814
LKKO01000047
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
8341
8266
-
Phe
GAA
[ENA]
¡û
>W1710872978
LMMK01000044
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
14357
14432
+
Phe
GAA
[ENA]
¡û
>W1710872991
LMML01000006
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
1748
1823
+
Phe
GAA
[ENA]
¡û
>W1710873096
LMMN01000012
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
103025
102950
-
Phe
GAA
[ENA]
¡û
>W1710873223
LMMQ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
489216
489141
-
Phe
GAA
[ENA]
¡û
>W1710873712
LMMZ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
187790
187715
-
Phe
GAA
[ENA]
¡û
>W1710873949
LMNE01000073
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
136894
136969
+
Phe
GAA
[ENA]
¡û
>W1710874145
LMNJ01000005
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
89431
89356
-
Phe
GAA
[ENA]
¡û
>W1710874266
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
259456
259381
-
Phe
GAA
[ENA]
¡û
>W1710874357
LMNN01000022
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
521360
521285
-
Phe
GAA
[ENA]
¡û
>W1710874445
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
299397
299472
+
Phe
GAA
[ENA]
¡û
>W1710874495
LMNQ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
22533
22458
-
Phe
GAA
[ENA]
¡û
>W1710874672
LMNU01000039
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
995
920
-
Phe
GAA
[ENA]
¡û
>W1710877801
LMQK01000023
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
132351
132426
+
Phe
GAA
[ENA]
¡û
>W1710878528
LMRA01000011
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
59554
59479
-
Phe
GAA
[ENA]
¡û
>W1710878619
LMRC01000012
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
132325
132400
+
Phe
GAA
[ENA]
¡û
>W1710879199
LMRM01000029
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
5556
5631
+
Phe
GAA
[ENA]
¡û
>W1710882973
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
908302
908377
+
Phe
GAA
[ENA]
¡û
>W1711571757
MNAO01000150
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
8160
8235
+
Phe
GAA
[ENA]
¡û
>C171092150
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
4330223
4330298
+
Phe
GAA
-
¡û
>C171115203
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
4470423
4470348
-
Phe
GAA
-
¡û
>WENV181234009
OFET01000756
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
77
2
-
Phe
GAA
[ENA]
¢þ
>WENV181234377
OFEU01000078
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
88553
88478
-
Phe
GAA
[ENA]
¢þ
>W08002398
ABEX01000005
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
20568
20643
+
Phe
GAA
[ENA]
¡û
>C08006511
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
2942638
2942566
-
Phe
GAA
[Ensembl]
¡û
>WENV170675529
LCWZ01111899
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
124
49
-
Phe
GAA
[ENA]
¢þ
>WENV170682381
LFIK01000040
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
27242
27317
+
Phe
GAA
[ENA]
¢þ
>WENV170682784
LFIK01001263
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
15472
15547
+
Phe
GAA
[ENA]
¢þ
>C181227837
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
2947999
2948074
+
Phe
GAA
-
¡û
>W09106846
ABEC01000002
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
15642
15567
-
Phe
GAA
[ENA]
¡û
>C09107440
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
3002460
3002385
-
Phe
GAA
[Ensembl]
¡û
>C09107527
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
3293567
3293492
-
Phe
GAA
[Ensembl]
¡û
>C09107628
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
2938592
2938517
-
Phe
GAA
[Ensembl]
¡û
>W1911708550
QOWC01000024
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
53085
53010
-
Phe
GAA
[ENA]
¡û
>W1810057225
PDHT01000070
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
8228
8303
+
Phe
GAA
[ENA]
¡û
>W1810487209
QAYK01000004
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
243107
243032
-
Phe
GAA
[ENA]
¡û
>W1810672705
QJTP01000004
Alphaproteobacteria
Methylobacterium sp. GV094 [QJTP]
243107
243032
-
Phe
GAA
[ENA]
¡û
>C151086713
CP011805
Alphaproteobacteria
Pelagerythrobacter marensis KCTC 22370 [CP011805]
1186906
1186981
+
Phe
GAA
[Ensembl]
¡û
>W121010671
AGJK01000057
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
17575
17650
+
Phe
GAA
[ENA]
¡û
>W1610516205
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1765226
1765301
+
Phe
GAA
[ENA]
¡û
>W1610661224
LJSX01000008
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
88594
88519
-
Phe
GAA
[ENA]
¡û
>W1610679911
LKKO01000047
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
8341
8266
-
Phe
GAA
[ENA]
¡û
>W1610735324
LMMK01000044
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
14357
14432
+
Phe
GAA
[ENA]
¡û
>W1610735337
LMML01000006
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
1748
1823
+
Phe
GAA
[ENA]
¡û
>W1610735442
LMMN01000012
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
103025
102950
-
Phe
GAA
[ENA]
¡û
>W1610735569
LMMQ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
489216
489141
-
Phe
GAA
[ENA]
¡û
>W1610736058
LMMZ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
187790
187715
-
Phe
GAA
[ENA]
¡û
>W1610736295
LMNE01000073
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
136894
136969
+
Phe
GAA
[ENA]
¡û
>W1610736491
LMNJ01000005
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
89431
89356
-
Phe
GAA
[ENA]
¡û
>W1610736612
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
259456
259381
-
Phe
GAA
[ENA]
¡û
>W1610736703
LMNN01000022
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
521360
521285
-
Phe
GAA
[ENA]
¡û
>W1610736791
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
299397
299472
+
Phe
GAA
[ENA]
¡û
>W1610736841
LMNQ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
22533
22458
-
Phe
GAA
[ENA]
¡û
>W1610737018
LMNU01000039
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
995
920
-
Phe
GAA
[ENA]
¡û
>W1610740147
LMQK01000023
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
132351
132426
+
Phe
GAA
[ENA]
¡û
>W1610740874
LMRA01000011
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
59554
59479
-
Phe
GAA
[ENA]
¡û
>W1610740965
LMRC01000012
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
132325
132400
+
Phe
GAA
[ENA]
¡û
>W1610741545
LMRM01000029
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
5556
5631
+
Phe
GAA
[ENA]
¡û
>W1610744899
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
908302
908377
+
Phe
GAA
[ENA]
¡û
>W1710501496
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1765226
1765301
+
Phe
GAA
[ENA]
¡û
>W1710609188
FXWG01000001
Alphaproteobacteria
Altererythrobacter xiamenensis [FXWG]
406375
406450
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK