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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454802 (56 seq.)
>W1710907001
LNOL01000036
Betaproteobacteria
Alcaligenes faecalis [LNOL]
408628
408553
-
Trp
CCA
[ENA]
¡û
>W1710995940
LQAS01000009
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
161
236
+
Trp
CCA
[ENA]
¡û
>W1711710523
MSZN01000035
Betaproteobacteria
Alcaligenes faecalis [MSZN]
192
267
+
Trp
CCA
[ENA]
¡û
>W1711710577
MSZO01000034
Betaproteobacteria
Alcaligenes faecalis [MSZO]
192
267
+
Trp
CCA
[ENA]
¡û
>W1711710616
MSZP01000006
Betaproteobacteria
Alcaligenes faecalis [MSZP]
63097
63022
-
Trp
CCA
[ENA]
¡û
>W1711710678
MSZQ01000022
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
63118
63043
-
Trp
CCA
[ENA]
¡û
>W1711710728
MSZR01000022
Betaproteobacteria
Alcaligenes faecalis [MSZR]
11652
11727
+
Trp
CCA
[ENA]
¡û
>W1711711912
MTBI01000006
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
605
680
+
Trp
CCA
[ENA]
¡û
>W1712110520
NJIH01000003
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
209579
209504
-
Trp
CCA
[ENA]
¡û
>C171098258
CP019697
Betaproteobacteria
Paenalcaligenes hominis 15S00501 [CP019697]
1635038
1634963
-
Trp
CCA
-
¡û
>C171115520
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
3998133
3998058
-
Trp
CCA
-
¡û
>W131051795
AMXV01000069
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
9386
9311
-
Trp
CCA
[ENA]
¡û
>W131223076
AUBT01000021
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
439
514
+
Trp
CCA
[ENA]
¡û
>W141104414
AVOG02000011
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
95
170
+
Trp
CCA
[ENA]
¡û
>WENV181308135
OFIS01000311
[OFIS] sludge metagenome; sludge
36575
36500
-
Trp
CCA
[ENA]
¢þ
>WENV181308330
OFIS01004587
[OFIS] sludge metagenome; sludge
2219
2144
-
Trp
CCA
[ENA]
¢þ
>WENV181311375
OFJB01001241
[OFJB] sludge metagenome; sludge
6137
6212
+
Trp
CCA
[ENA]
¢þ
>WENV181401671
OFTX01002391
[OFTX] sludge metagenome; sludge
5262
5187
-
Trp
CCA
[ENA]
¢þ
>WENV181402661
OFTY01014881
[OFTY] sludge metagenome; sludge
903
978
+
Trp
CCA
[ENA]
¢þ
>W141237745
BBJQ01000023
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
21776
21701
-
Trp
CCA
[ENA]
¡û
>WENV183739577
PJUE01034639
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
250
175
-
Trp
CCA
[ENA]
¢þ
>WENV183740398
PJUF01001626
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
10685
10610
-
Trp
CCA
[ENA]
¢þ
>WENV170645924
JQGF01000740
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
258
333
+
Trp
CCA
[ENA]
¢þ
>WENV170646012
JQGF01006493
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
251
326
+
Trp
CCA
[ENA]
¢þ
>WENV170655670
JTFN01056535
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
194
269
+
Trp
CCA
[ENA]
¢þ
>WENV170655741
JTFN01066235
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
198
123
-
Trp
CCA
[ENA]
¢þ
>WENV170655863
JTFN01087732
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
468
393
-
Trp
CCA
[ENA]
¢þ
>WENV170657154
JTFO01092539
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
194
269
+
Trp
CCA
[ENA]
¢þ
>WENV170657248
JTFO01110541
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
198
123
-
Trp
CCA
[ENA]
¢þ
>WENV170657318
JTFO01124083
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
84
9
-
Trp
CCA
[ENA]
¢þ
>WENV170657459
JTFO01158034
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
19
94
+
Trp
CCA
[ENA]
¢þ
>WENV170657467
JTFO01160436
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
122
197
+
Trp
CCA
[ENA]
¢þ
>WENV170657474
JTFO01162442
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
198
273
+
Trp
CCA
[ENA]
¢þ
>WENV170687976
LFRM01220536
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5468
5393
-
Trp
CCA
[ENA]
¢þ
>WENV170965464
MTEU01002882
[MTEU] soil metagenome; naturally attenuated soil
313
238
-
Trp
CCA
[ENA]
¢þ
>C181053239
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
4028963
4028888
-
Trp
CCA
-
¡û
>C181088597
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
3741877
3741802
-
Trp
CCA
-
¡û
>C191085276
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
4283570
4283495
-
Trp
CCA
-
¡û
>C191091177
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
2479473
2479398
-
Trp
CCA
-
¡û
>C191113982
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
942476
942401
-
Trp
CCA
-
¡û
>C191149663
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
1838535
1838460
-
Trp
CCA
-
¡û
>W1911622508
PQSP01000005
Betaproteobacteria
Saezia sanguinis CNM695-12 [PQSP]
100
175
+
Trp
CCA
[ENA]
¡û
>W1810089047
PGEK01000056
Betaproteobacteria
Castellaniella caeni CD04 [PGEK]
118
193
+
Trp
CCA
[ENA]
¡û
>W1810583917
QEXO01000005
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
67639
67564
-
Trp
CCA
[ENA]
¡û
>C151101372
HG916765
Betaproteobacteria
Castellaniella defragrans 65Phen [HG916765]
171098
171023
-
Trp
CCA
[Ensembl]
¡û
>W1511321012
JQCV01000002
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
497666
497741
+
Trp
CCA
[ENA]
¡û
>W1511537461
JZBR01000004
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
1275
1350
+
Trp
CCA
[ENA]
¡û
>C161051362
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
4233573
4233498
-
Trp
CCA
[Ensembl]
¡û
>W121091196
AKMR01000003
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
276
351
+
Trp
CCA
[ENA]
¡û
>W1610074277
BCWN01000033
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
77
152
+
Trp
CCA
[ENA]
¡û
>W1610093567
CYTB01000004
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
349840
349915
+
Trp
CCA
[ENA]
¡û
>W1610766015
LNOL01000036
Betaproteobacteria
Alcaligenes faecalis [LNOL]
408628
408553
-
Trp
CCA
[ENA]
¡û
>W1610850597
LQAS01000009
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
161
236
+
Trp
CCA
[ENA]
¡û
>W1610921539
LSUO01000026
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
21774
21699
-
Trp
CCA
[ENA]
¡û
>W1710071395
BCWN01000033
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
77
152
+
Trp
CCA
[ENA]
¡û
>W1710082534
BDHG01000003
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
350012
350087
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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