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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454941 (124 seq.)
>W1710897071
LNHS01000029
Gammaproteobacteria
Providencia stuartii [LNHS]
4338
4413
+
Thr
GGT
[ENA]
¡û
>W1710932218
LOIC01000022
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
27412
27337
-
Thr
GGT
[ENA]
¡û
>W1711014682
LQUJ01000094
Gammaproteobacteria
Escherichia coli [LQUJ]
42613
42538
-
Thr
GGT
[ENA]
¡û
>W1711327265
MBJU01000019
Gammaproteobacteria
Photorhabdus temperata [MBJU]
298
223
-
Thr
GGT
[ENA]
¡û
>W1711487854
MKGQ01000031
Gammaproteobacteria
Xenorhabdus eapokensis DL20 [MKGQ]
25103
25028
-
Thr
GGT
[ENA]
¡û
>W1711487935
MKGR01000034
Gammaproteobacteria
Xenorhabdus thuongxuanensis 30TX1 [MKGR]
4320
4395
+
Thr
GGT
[ENA]
¡û
>W1711684380
MSAA01000030
Gammaproteobacteria
Providencia stuartii [MSAA]
324
249
-
Thr
GGT
[ENA]
¡û
>W1711738806
MUBJ01000023
Gammaproteobacteria
Xenorhabdus vietnamensis [MUBJ]
64992
65067
+
Thr
GGT
[ENA]
¡û
>W1711738875
MUBK01000034
Gammaproteobacteria
Xenorhabdus beddingii [MUBK]
29069
29144
+
Thr
GGT
[ENA]
¡û
>W1711822593
MXNG01000040
Gammaproteobacteria
Salmonella enterica [MXNG]
4008
4083
+
Thr
GGT
[ENA]
¡û
>W1711853450
MYFJ01000064
Gammaproteobacteria
Photorhabdus luminescens [MYFJ]
330
255
-
Thr
GGT
[ENA]
¡û
>W131223518
AUCC01000137
Gammaproteobacteria
Arsenophonus nasoniae DSM 15247 [AUCC]
848
773
-
Thr
GGT
[ENA]
¡û
>W1712108891
NJEY01000002
Gammaproteobacteria
Providencia stuartii [NJEY]
1132572
1132497
-
Thr
GGT
[ENA]
¡û
>C171007055
CP010238
Gammaproteobacteria
Escherichia coli S50 [CP010238]
2246620
2246695
+
Thr
GGT
-
¡û
>C171046442
CP016176
Gammaproteobacteria
Xenorhabdus hominickii ANU1 [CP016176]
3168725
3168650
-
Thr
GGT
-
¡û
>C171056040
CP017054
Gammaproteobacteria
Providencia stuartii BE2467 [CP017054]
3157733
3157808
+
Thr
GGT
-
¡û
>W141024418
AKKM01000043
Gammaproteobacteria
Providencia alcalifaciens Dmel2 [AKKM]
4397
4472
+
Thr
GGT
[ENA]
¡û
>W141090729
AUXQ01000050
Gammaproteobacteria
Photorhabdus temperata subsp. temperata M1021 [AUXQ]
17692
17617
-
Thr
GGT
[ENA]
¡û
>W141153946
AXDT01000439
Gammaproteobacteria
Photorhabdus temperata J3 [AXDT]
1048
1123
+
Thr
GGT
[ENA]
¡û
>W08006463
ABJD02000087
Gammaproteobacteria
Providencia stuartii ATCC 25827 [ABJD]
4606
4681
+
Thr
GGT
[ENA]
¡û
>W141193837
AYSJ01000016
Gammaproteobacteria
Photorhabdus khanii subsp. khanii NC19 [AYSJ]
3923
3998
+
Thr
GGT
[ENA]
¡û
>W141221475
AZYZ01000025
Gammaproteobacteria
Providencia alcalifaciens PAL-3 [AZYZ]
200
125
-
Thr
GGT
[ENA]
¡û
>W141253995
CBST010000068
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae France [CBST]
348
273
-
Thr
GGT
[ENA]
¡û
>W141254063
CBSU010000135
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae Florida [CBSU]
861
786
-
Thr
GGT
[ENA]
¡û
>W141254123
CBSV010000013
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae Moldova [CBSV]
390
315
-
Thr
GGT
[ENA]
¡û
>W141254192
CBSW010000035
Gammaproteobacteria
Xenorhabdus bovienii str. puntauvense [CBSW]
361
286
-
Thr
GGT
[ENA]
¡û
>W141254273
CBSX010000124
Gammaproteobacteria
Xenorhabdus bovienii str. oregonense [CBSX]
260
185
-
Thr
GGT
[ENA]
¡û
>W141254344
CBSY010000157
Gammaproteobacteria
Xenorhabdus bovienii str. kraussei Quebec [CBSY]
360
285
-
Thr
GGT
[ENA]
¡û
>W141254427
CBSZ010000346
Gammaproteobacteria
Xenorhabdus bovienii str. kraussei Becker Underwood [CBSZ]
260
185
-
Thr
GGT
[ENA]
¡û
>W141254493
CBTA010000128
Gammaproteobacteria
Xenorhabdus bovienii str. Jollieti [CBTA]
252
177
-
Thr
GGT
[ENA]
¡û
>W141254531
CBTB010000101
Gammaproteobacteria
Xenorhabdus bovienii str. Intermedium [CBTB]
254
179
-
Thr
GGT
[ENA]
¡û
>W141258421
CBXE010000117
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [CBXE]
4219
4294
+
Thr
GGT
[ENA]
¡û
>W141258486
CBXF010000153
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [CBXF]
3930
4005
+
Thr
GGT
[ENA]
¡û
>W141275246
JACS01000005
Gammaproteobacteria
Providencia alcalifaciens F90-2004 [JACS]
7531
7606
+
Thr
GGT
[ENA]
¡û
>W141283192
JAKZ01000008
Gammaproteobacteria
Providencia alcalifaciens PAL-2 [JAKZ]
3990
4065
+
Thr
GGT
[ENA]
¡û
>W141283292
JALA01000021
Gammaproteobacteria
Providencia alcalifaciens PAL-1 [JALA]
4242
4317
+
Thr
GGT
[ENA]
¡û
>W141283306
JALB01000011
Gammaproteobacteria
Providencia alcalifaciens RIMD 1656011 [JALB]
3988
4063
+
Thr
GGT
[ENA]
¡û
>W141283365
JALC01000006
Gammaproteobacteria
Providencia alcalifaciens R90-1475 [JALC]
1414
1339
-
Thr
GGT
[ENA]
¡û
>W141283476
JALD01000077
Gammaproteobacteria
Providencia alcalifaciens 205/92 [JALD]
1414
1339
-
Thr
GGT
[ENA]
¡û
>WENV170386827
CETY01197579
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
13760
13685
-
Thr
GGT
[ENA]
¢þ
>W141461943
JFGV01000068
Gammaproteobacteria
Photorhabdus aegyptia BA1 [JFGV]
26385
26310
-
Thr
GGT
[ENA]
¡û
>WENV170885619
MDTC01205755
[MDTC] marine metagenome; seawater
66900
66825
-
Thr
GGT
[ENA]
¢þ
>C181084035
CP023536
Gammaproteobacteria
Providencia alcalifaciens FDAARGOS_408 [CP023536]
1186716
1186791
+
Thr
GGT
-
¡û
>C181138120
CP026704
Gammaproteobacteria
Providencia stuartii AR_0026 [CP026704]
1831779
1831854
+
Thr
GGT
-
¡û
>C181152011
CP027398
Gammaproteobacteria
Providencia stuartii FDAARGOS_291 [CP027398]
3792500
3792425
-
Thr
GGT
-
¡û
>W09112427
ABXV01000040
Gammaproteobacteria
Providencia rustigianii DSM 4541 [ABXV]
4180
4255
+
Thr
GGT
[ENA]
¡û
>W09112505
ABXW01000066
Gammaproteobacteria
Providencia alcalifaciens DSM 30120 [ABXW]
203
128
-
Thr
GGT
[ENA]
¡û
>C181212401
LS483422
Gammaproteobacteria
Providencia heimbachae NCTC12003 [LS483422]
4109904
4109829
-
Thr
GGT
-
¡û
>C181215348
LS483467
Gammaproteobacteria
Providencia alcalifaciens NCTC10286 [LS483467]
3896075
3896000
-
Thr
GGT
-
¡û
>C191057259
CP028384
Gammaproteobacteria
Providencia heimbachae 99101 [CP028384]
4086851
4086776
-
Thr
GGT
-
¡û
>C191087976
CP032329
Gammaproteobacteria
Xenorhabdus nematophila YL001 [CP032329]
3180374
3180299
-
Thr
GGT
-
¡û
>C191121617
CP034212
Gammaproteobacteria
Escherichia albertii 2010C-3449 [CP034212]
2256643
2256568
-
Thr
GGT
-
¡û
>C191161407
CP038613
Gammaproteobacteria
Arsenophonus nasoniae FIN [CP038613]
3793915
3793840
-
Thr
GGT
-
¡û
>C191199197
LR134189
Gammaproteobacteria
Providencia rustigianii NCTC6933 [LR134189]
3772760
3772685
-
Thr
GGT
-
¡û
>C191210607
LR134396
Gammaproteobacteria
Providencia rustigianii NCTC8113 [LR134396]
3721381
3721306
-
Thr
GGT
-
¡û
>W1910044278
BELL01000053
Gammaproteobacteria
Escherichia coli O26:H11 02E003 [BELL]
4114
4189
+
Thr
GGT
[ENA]
¡û
>W1910339722
FTLG01000027
Gammaproteobacteria
Xenorhabdus innexi [FTLG]
4172
4247
+
Thr
GGT
[ENA]
¡û
>W1910918807
NIBS01000049
Gammaproteobacteria
Xenorhabdus budapestensis DSM 16342 [NIBS]
413
338
-
Thr
GGT
[ENA]
¡û
>W1910918879
NIBT01000017
Gammaproteobacteria
Xenorhabdus ehlersii DSM 16337 [NIBT]
4286
4361
+
Thr
GGT
[ENA]
¡û
>W1910918969
NIBU01000120
Gammaproteobacteria
Xenorhabdus innexi DSM 16336 [NIBU]
316
241
-
Thr
GGT
[ENA]
¡û
>W1910918994
NIBV01000001
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [NIBV]
722418
722343
-
Thr
GGT
[ENA]
¡û
>W1910932698
NITY01000028
Gammaproteobacteria
Xenorhabdus mauleonii DSM 17908 [NITY]
29197
29272
+
Thr
GGT
[ENA]
¡û
>W1910932767
NITZ01000021
Gammaproteobacteria
Xenorhabdus miraniensis DSM 17902 [NITZ]
99527
99602
+
Thr
GGT
[ENA]
¡û
>W1910932786
NITZ01000052
Gammaproteobacteria
Xenorhabdus miraniensis DSM 17902 [NITZ]
281
206
-
Thr
GGT
[ENA]
¡û
>W1910932834
NIUA01000001
Gammaproteobacteria
Xenorhabdus szentirmaii US123 [NIUA]
3079452
3079377
-
Thr
GGT
[ENA]
¡û
>W1910939809
NJAH01000073
Gammaproteobacteria
Xenorhabdus sp. KK7.4 [NJAH]
397
322
-
Thr
GGT
[ENA]
¡û
>W1910939826
NJAI01000001
Gammaproteobacteria
Xenorhabdus hominickii DSM 17903 [NJAI]
676900
676825
-
Thr
GGT
[ENA]
¡û
>W1910939966
NJAJ01000077
Gammaproteobacteria
Xenorhabdus stockiae DSM 17904 [NJAJ]
4253
4328
+
Thr
GGT
[ENA]
¡û
>W1910940012
NJAK01000001
Gammaproteobacteria
Xenorhabdus ishibashii DSM 22670 [NJAK]
1549573
1549498
-
Thr
GGT
[ENA]
¡û
>W1910941362
NJCW01000068
Gammaproteobacteria
Xenorhabdus sp. KJ12.1 [NJCW]
4269
4344
+
Thr
GGT
[ENA]
¡û
>W1910941376
NJCX01000002
Gammaproteobacteria
Xenorhabdus kozodoii DSM 17907 [NJCX]
4302
4377
+
Thr
GGT
[ENA]
¡û
>W1910942267
NJGH01000113
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [NJGH]
4488
4563
+
Thr
GGT
[ENA]
¡û
>C09108353
FM162591
Gammaproteobacteria
Photorhabdus asymbiotica [FM162591]
4881394
4881319
-
Thr
GGT
[Ensembl]
¡û
>W1911238198
NSCJ01000093
Gammaproteobacteria
Photorhabdus sp. S10-54 [NSCJ]
4279
4354
+
Thr
GGT
[ENA]
¡û
>W1911238267
NSCK01000090
Gammaproteobacteria
Photorhabdus sp. S9-53 [NSCK]
4279
4354
+
Thr
GGT
[ENA]
¡û
>W1911238336
NSCL01000093
Gammaproteobacteria
Photorhabdus sp. S8-52 [NSCL]
4276
4351
+
Thr
GGT
[ENA]
¡û
>W1911238407
NSCM01000087
Gammaproteobacteria
Photorhabdus bodei LJ24-63 [NSCM]
4279
4354
+
Thr
GGT
[ENA]
¡û
>W1911238478
NSCN01000051
Gammaproteobacteria
Photorhabdus sp. HUG-39 [NSCN]
18212
18137
-
Thr
GGT
[ENA]
¡û
>W1911632392
PUJX01000071
Gammaproteobacteria
Photorhabdus luminescens MEX47-22 [PUJX]
330
255
-
Thr
GGT
[ENA]
¡û
>W1911632463
PUJY01000106
Gammaproteobacteria
Photorhabdus khanii MEX20-17 [PUJY]
498
423
-
Thr
GGT
[ENA]
¡û
>W1810091244
PGGX01000035
Gammaproteobacteria
Providencia stuartii YD789-2 [PGGX]
252
177
-
Thr
GGT
[ENA]
¡û
>W1810339412
PUWT01000084
Gammaproteobacteria
Photorhabdus hindustanensis H1 [PUWT]
4426
4501
+
Thr
GGT
[ENA]
¡û
>W1810376744
PXIC01000021
Gammaproteobacteria
Providencia alcalifaciens PRM-2 [PXIC]
4314
4389
+
Thr
GGT
[ENA]
¡û
>W1810861687
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
206322
206397
+
Thr
GGT
[ENA]
¡û
>C151040074
CP008920
Gammaproteobacteria
Providencia stuartii ATCC 33672 [CP008920]
982298
982223
-
Thr
GGT
[Ensembl]
¡û
>C151076917
CP011104
Gammaproteobacteria
Photorhabdus thracensis DSM 15199 [CP011104]
1689797
1689722
-
Thr
GGT
[Ensembl]
¡û
>C151098180
FO704550
Gammaproteobacteria
Xenorhabdus doucetiae FRM16 [FO704550]
268533
268608
+
Thr
GGT
[Ensembl]
¡û
>C151098281
FO704551
Gammaproteobacteria
Xenorhabdus poinarii G6 [FO704551]
3493869
3493794
-
Thr
GGT
[Ensembl]
¡û
>C151098360
FO818637
Gammaproteobacteria
Xenorhabdus bovienii CS03 [FO818637]
4466959
4466884
-
Thr
GGT
[Ensembl]
¡û
>C151103896
LN681227
Gammaproteobacteria
Xenorhabdus nematophila AN6/1 [LN681227]
258145
258220
+
Thr
GGT
[Ensembl]
¡û
>W1510059510
CCWM01000325
Gammaproteobacteria
Xenorhabdus nematophila str. Anatoliense [CCWM]
646
721
+
Thr
GGT
[ENA]
¡û
>W1510059556
CCWM01000486
Gammaproteobacteria
Xenorhabdus nematophila str. Anatoliense [CCWM]
646
721
+
Thr
GGT
[ENA]
¡û
>W1510060131
CCWW01000297
Gammaproteobacteria
Xenorhabdus nematophila str. Websteri [CCWW]
643
718
+
Thr
GGT
[ENA]
¡û
>W1510060187
CCWW01000482
Gammaproteobacteria
Xenorhabdus nematophila str. Websteri [CCWW]
643
718
+
Thr
GGT
[ENA]
¡û
>C10114166
FN667741
Gammaproteobacteria
Xenorhabdus bovienii SS-2004 [FN667741]
4071386
4071311
-
Thr
GGT
[Ensembl]
¡û
>C10114263
FN667742
Gammaproteobacteria
Xenorhabdus nematophila ATCC 19061 [FN667742]
258143
258218
+
Thr
GGT
[Ensembl]
¡û
>C11116835
FM162591
Gammaproteobacteria
Photorhabdus asymbiotica [FM162591]
4881394
4881319
-
Thr
GGT
[Ensembl]
¡û
>W1511335064
JQOC01000030
Gammaproteobacteria
Photorhabdus luminescens LN2 [JQOC]
26416
26341
-
Thr
GGT
[ENA]
¡û
>W1511347722
JRJV01000205
Gammaproteobacteria
Xenorhabdus nematophila C2-3 [JRJV]
955
1030
+
Thr
GGT
[ENA]
¡û
>W1511349399
JRLH01000016
Gammaproteobacteria
Candidatus Arsenophonus nilaparvatae str. Hangzhou of Nilaparvata lugens [JRLH]
47854
47929
+
Thr
GGT
[ENA]
¡û
>W1511387295
JSUM01000007
Gammaproteobacteria
Chelonobacter oris 1662 [JSUM]
31028
31103
+
Thr
GGT
[ENA]
¡û
>W1511393806
JTAU01000001
Gammaproteobacteria
Providencia stuartii FDAARGOS_87 [JTAU]
2815419
2815494
+
Thr
GGT
[ENA]
¡û
>W1511401214
JTHJ02000672
Gammaproteobacteria
Photorhabdus luminescens NBAII HiPL101 [JTHJ]
222
147
-
Thr
GGT
[ENA]
¡û
>W1511401249
JTHK01000382
Gammaproteobacteria
Xenorhabdus sp. NBAII XenSa04 [JTHK]
201
276
+
Thr
GGT
[ENA]
¡û
>W1511510860
JXSK01000009
Gammaproteobacteria
Photorhabdus luminescens subsp. luminescens DSM 3368 [JXSK]
31066
30991
-
Thr
GGT
[ENA]
¡û
>W1511512721
JXUR02000613
Gammaproteobacteria
Photorhabdus luminescens NBAII Hb105 [JXUR]
222
147
-
Thr
GGT
[ENA]
¡û
>W1511638098
LDNM01000125
Gammaproteobacteria
Xenorhabdus griffiniae BMMCB [LDNM]
26014
25939
-
Thr
GGT
[ENA]
¡û
>W1511638748
LDOF01000076
Gammaproteobacteria
Moellerella wisconsensis GTA-1455 [LDOF]
324
249
-
Thr
GGT
[ENA]
¡û
>W1511678267
LFCV01000084
Gammaproteobacteria
Xenorhabdus khoisanae MCB [LFCV]
299
224
-
Thr
GGT
[ENA]
¡û
>C121013391
CP003488
Gammaproteobacteria
Providencia stuartii MRSN 2154 [CP003488]
2443629
2443704
+
Thr
GGT
[Ensembl]
¡û
>C161064825
CP014024
Gammaproteobacteria
Providencia stuartii FDAARGOS_145 [CP014024]
2869114
2869039
-
Thr
GGT
-
¡û
>W1610032517
AZAB02000147
Gammaproteobacteria
Photorhabdus luminescens NBAII H75HRPL105 [AZAB]
221
146
-
Thr
GGT
[ENA]
¡û
>W1610419451
FIZD01000002
Gammaproteobacteria
Providencia heimbachae [FIZD]
4373
4448
+
Thr
GGT
[ENA]
¡û
>W1610610190
LGAA01000005
Gammaproteobacteria
Moellerella wisconsensis ATCC 35017 [LGAA]
197
122
-
Thr
GGT
[ENA]
¡û
>W1610757475
LNHS01000029
Gammaproteobacteria
Providencia stuartii [LNHS]
4338
4413
+
Thr
GGT
[ENA]
¡û
>W1610789749
LOIC01000022
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
27412
27337
-
Thr
GGT
[ENA]
¡û
>W1610863158
LQUJ01000094
Gammaproteobacteria
Escherichia coli [LQUJ]
42613
42538
-
Thr
GGT
[ENA]
¡û
>W1610994258
LXEN01000089
Gammaproteobacteria
Proteus myxofaciens ATCC 19692 [LXEN]
4375
4450
+
Thr
GGT
[ENA]
¡û
>W1610994914
LXEW01000029
Gammaproteobacteria
Providencia heimbachae ATCC 35613 [LXEW]
194
119
-
Thr
GGT
[ENA]
¡û
>W1710419187
FIZD01000002
Gammaproteobacteria
Providencia heimbachae [FIZD]
4373
4448
+
Thr
GGT
[ENA]
¡û
>W1710565536
FORG01000061
Gammaproteobacteria
Xenorhabdus mauleonii [FORG]
4300
4375
+
Thr
GGT
[ENA]
¡û
>W1710571031
FOVO01000037
Gammaproteobacteria
Xenorhabdus japonica [FOVO]
30557
30632
+
Thr
GGT
[ENA]
¡û
>W1710578207
FPBJ01000069
Gammaproteobacteria
Xenorhabdus koppenhoeferi [FPBJ]
278
203
-
Thr
GGT
[ENA]
¡û
>W1710605359
FWWV01000002
Gammaproteobacteria
Pasteurella testudinis DSM 23072 [FWWV]
74799
74724
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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