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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454954 (57 seq.)
>W1710861901
LMDZ01000004
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
859942
860016
+
Val
CAC
[ENA]
¡û
>W1710865528
LMGT01000001
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
1048475
1048401
-
Val
CAC
[ENA]
¡û
>W1710866806
LMHT01000035
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
332550
332624
+
Val
CAC
[ENA]
¡û
>W1710867682
LMIM01000001
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
829644
829718
+
Val
CAC
[ENA]
¡û
>W1711073876
LSJA01000038
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
53452
53378
-
Val
CAC
[ENA]
¡û
>W1711075178
LSKE01000157
Alphaproteobacteria
Phenylobacterium sp. CCH12-B4 [LSKE]
22546
22620
+
Val
CAC
[ENA]
¡û
>W1711407969
MGLI01000181
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
3925
3851
-
Val
CAC
[ENA]
¡û
>C005349
AE005673
Alphaproteobacteria
Caulobacter vibrioides CB15 [AE005673]
2509083
2509157
+
Val
CAC
[Ensembl]
¡û
>WENV180018739
FTAI01000535
[FTAI] metagenome; soil
3910
3836
-
Val
CAC
[ENA]
¢þ
>WENV180019244
FTBQ01000020
[FTBQ] metagenome; soil
485
411
-
Val
CAC
[ENA]
¢þ
>WENV180022208
FTFU01001121
[FTFU] metagenome; soil
6604
6678
+
Val
CAC
[ENA]
¢þ
>WENV180024018
FTIF01009400
[FTIF] metagenome; soil
844
918
+
Val
CAC
[ENA]
¢þ
>WENV180024202
FTIF01212425
[FTIF] metagenome; soil
1012
1086
+
Val
CAC
[ENA]
¢þ
>WENV180024235
FTIF01349048
[FTIF] metagenome; soil
13063
12989
-
Val
CAC
[ENA]
¢þ
>WENV180026563
FTIU01002919
[FTIU] metagenome; soil
16181
16255
+
Val
CAC
[ENA]
¢þ
>WENV180035359
FTKT01382283
[FTKT] metagenome; soil
1423
1497
+
Val
CAC
[ENA]
¢þ
>WENV180397854
OBPZ01016517
[OBPZ] marine metagenome; ENVO:00002010
271
197
-
Val
CAC
[ENA]
¢þ
>WENV181223011
OFDC01001139
[OFDC] hot springs metagenome; Water
7052
7126
+
Val
CAC
[ENA]
¢þ
>WENV181227110
OFDN01001890
[OFDN] hot springs metagenome; Water
8465
8391
-
Val
CAC
[ENA]
¢þ
>WENV181227333
OFDN01006764
[OFDN] hot springs metagenome; Water
1509
1583
+
Val
CAC
[ENA]
¢þ
>W08010835
ABRU01000040
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
15476
15405
-
Val
CAC
[ENA]
¡û
>W141230469
BATC01000025
Alphaproteobacteria
Brevundimonas abyssalis TAR-001 [BATC]
1499
1425
-
Val
CAC
[ENA]
¡û
>WENV183697911
OUNK010341203
[OUNK] metagenome; soil
1061
1135
+
Val
CAC
[ENA]
¢þ
>WENV183734712
PJTZ01049495
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
127
201
+
Val
CAC
[ENA]
¢þ
>WENV170003573
AGTN01380532
[AGTN] bioreactor metagenome; poplar biomass
214
288
+
Val
CAC
[ENA]
¢þ
>WENV170003651
AGTN01405940
[AGTN] bioreactor metagenome; poplar biomass
437
363
-
Val
CAC
[ENA]
¢þ
>WENV170192918
CEPG01031699
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
110
184
+
Val
CAC
[ENA]
¢þ
>WENV170193363
CEPH01068408
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
559
485
-
Val
CAC
[ENA]
¢þ
>WENV170200923
CEPP01015337
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
846
772
-
Val
CAC
[ENA]
¢þ
>WENV170574157
FLYM01009741
[FLYM] hot springs metagenome; Sediment
7
81
+
Val
CAC
[ENA]
¢þ
>WENV170574393
FLYM01033285
[FLYM] hot springs metagenome; Sediment
774
700
-
Val
CAC
[ENA]
¢þ
>WENV170574545
FLYM01056804
[FLYM] hot springs metagenome; Sediment
437
363
-
Val
CAC
[ENA]
¢þ
>C181078836
CP023313
Alphaproteobacteria
Caulobacter vibrioides CB2 [CP023313]
2633281
2633355
+
Val
CAC
-
¡û
>C181078961
CP023315
Alphaproteobacteria
Caulobacter vibrioides CB13b1a [CP023315]
1293623
1293549
-
Val
CAC
-
¡û
>C191114284
CP033875
Alphaproteobacteria
Caulobacter sp. FWC26 [CP033875]
3125200
3125274
+
Val
CAC
-
¡û
>C191119771
CP034122
Alphaproteobacteria
Caulobacter vibrioides CB2A [CP034122]
2531054
2531128
+
Val
CAC
-
¡û
>C191189116
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
1740782
1740856
+
Val
CAC
-
¡û
>W141712436
JMQR01000017
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
38008
37934
-
Val
CAC
[ENA]
¡û
>W141779507
JONW01000010
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
60712
60638
-
Val
CAC
[ENA]
¡û
>W1910725247
MGLK01000003
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
193989
193915
-
Val
CAC
[ENA]
¡û
>W1910743240
MHXN01000032
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_69_31 [MHXN]
84406
84480
+
Val
CAC
[ENA]
¡û
>W1911737851
QTTA01000010
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
17497
17423
-
Val
CAC
[ENA]
¡û
>W1810073451
PEGF01000001
Alphaproteobacteria
Caulobacter sp. X [PEGF]
1096344
1096418
+
Val
CAC
[ENA]
¡û
>W1810073575
PEGH01000019
Alphaproteobacteria
Caulobacter sp. BP25 [PEGH]
164640
164714
+
Val
CAC
[ENA]
¡û
>W1810474465
QAII01000028
Alphaproteobacteria
Caulobacter sp. HMWF025 [QAII]
11704
11778
+
Val
CAC
[ENA]
¡û
>W1810594062
QFYQ01000001
Alphaproteobacteria
Phenylobacterium soli LX32 [QFYQ]
3081757
3081831
+
Val
CAC
[ENA]
¡û
>W1810594175
QFYS01000014
Alphaproteobacteria
Phenylobacterium kunshanense BUT-10 [QFYS]
424
350
-
Val
CAC
[ENA]
¡û
>W10109881
ADBN01000002
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
108472
108398
-
Val
CAC
[ENA]
¡û
>C10102224
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
1532650
1532576
-
Val
CAC
[Ensembl]
¡û
>W11112318
ADBN01000002
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
108472
108398
-
Val
CAC
[ENA]
¡û
>C161047043
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2316685
2316759
+
Val
CAC
[Ensembl]
¡û
>W1610724247
LMDZ01000004
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
859942
860016
+
Val
CAC
[ENA]
¡û
>W1610727874
LMGT01000001
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
1048475
1048401
-
Val
CAC
[ENA]
¡û
>W1610729152
LMHT01000035
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
332550
332624
+
Val
CAC
[ENA]
¡û
>W1610730028
LMIM01000001
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
829644
829718
+
Val
CAC
[ENA]
¡û
>W1610913181
LSJA01000038
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
53452
53378
-
Val
CAC
[ENA]
¡û
>W1610914483
LSKE01000157
Alphaproteobacteria
Phenylobacterium sp. CCH12-B4 [LSKE]
22546
22620
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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