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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454955 (116 seq.)
>W1710885892
LMXN01000002
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
120542
120615
+
Thr
TGT
[ENA]
¡û
>W1711021977
LQZQ01000045
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
303442
303517
+
Thr
TGT
[ENA]
¡û
>W1711027003
LRDB01000005
Bacteroidota
Roseivirga echinicomitans [LRDB]
58524
58597
+
Thr
TGT
[ENA]
¡û
>W1711047553
LRPB01000034
Bacteroidota
Roseivirga seohaensis [LRPB]
178389
178314
-
Thr
TGT
[ENA]
¡û
>W1711179121
LWHJ01000011
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
73745
73818
+
Thr
TGT
[ENA]
¡û
>W1711338626
MBTF01000039
Bacteroidota
Mucilaginibacter pedocola [MBTF]
81210
81137
-
Thr
TGT
[ENA]
¡û
>W1711354792
MDFN01000030
Bacteroidota
Arcticibacter eurypsychrophilus [MDFN]
62241
62166
-
Thr
TGT
[ENA]
¡û
>W1711503563
MKTS01000009
Bacteroidota
Mucilaginibacter sp. 44-25 [MKTS]
521495
521422
-
Thr
TGT
[ENA]
¡û
>W1711629925
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
602327
602400
+
Thr
TGT
[ENA]
¡û
>W1711629941
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
5119509
5119582
+
Thr
TGT
[ENA]
¡û
>W1711707890
MSSV01000008
Bacteroidota
Algoriphagus ratkowskyi [MSSV]
164786
164711
-
Thr
TGT
[ENA]
¡û
>W1711707927
MSSW01000042
Bacteroidota
Algoriphagus antarcticus [MSSW]
106139
106214
+
Thr
TGT
[ENA]
¡û
>C171057633
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3285128
3285201
+
Thr
TGT
-
¡û
>W131145918
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
1856140
1856213
+
Thr
TGT
[ENA]
¡û
>W131156278
AQPN01000139
Bacteroidota
Arcticibacter svalbardensis MN12-7 [AQPN]
19591
19516
-
Thr
TGT
[ENA]
¡û
>W131229760
AUHA01000002
Bacteroidota
Daejeonella oryzae DSM 19973 [AUHA]
13730
13655
-
Thr
TGT
[ENA]
¡û
>w027799
ABCM01000011
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
196104
196027
-
Thr
TGT
[ENA]
¡û
>w023305
AAXU01000001
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
689849
689772
-
Thr
TGT
[ENA]
¡û
>W141027913
AKZJ01000001
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
495507
495580
+
Thr
TGT
[ENA]
¡û
>WENV180345230
OBLM01140024
[OBLM] soil metagenome; soil
221
148
-
Thr
TGT
[ENA]
¢þ
>WENV181384098
OFRH01016794
[OFRH] wastewater metagenome; Exp Tend NO 100WW
328
401
+
Thr
TGT
[ENA]
¢þ
>W141142876
AWRU01000032
Bacteroidota
Pedobacter sp. V48 [AWRU]
35009
34936
-
Thr
TGT
[ENA]
¡û
>W141222956
BACV01000825
Bacteroidota
Cytophagales bacterium B6 B6 [BACV]
2240
2313
+
Thr
TGT
[ENA]
¡û
>WENV183726590
PJTO01000028
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
120442
120515
+
Thr
TGT
[ENA]
¢þ
>WENV183726616
PJTO01000032
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
243358
243431
+
Thr
TGT
[ENA]
¢þ
>WENV183728386
PJTQ01000038
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
120442
120515
+
Thr
TGT
[ENA]
¢þ
>WENV183728411
PJTQ01000044
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
243359
243432
+
Thr
TGT
[ENA]
¢þ
>WENV183729699
PJTR01000020
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
217063
217136
+
Thr
TGT
[ENA]
¢þ
>WENV183731583
PJTT01000035
[PJTT] soil metagenome; Soil (2) enriched on wood chips
217063
217136
+
Thr
TGT
[ENA]
¢þ
>WENV183732410
PJTX01000136
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
1628
1701
+
Thr
TGT
[ENA]
¢þ
>WENV183732768
PJTX01011910
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
861
934
+
Thr
TGT
[ENA]
¢þ
>WENV183734353
PJTZ01003076
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
1157
1084
-
Thr
TGT
[ENA]
¢þ
>WENV183734356
PJTZ01003092
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
1156
1083
-
Thr
TGT
[ENA]
¢þ
>WENV183737490
PJUD01010554
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
500
427
-
Thr
TGT
[ENA]
¢þ
>WENV183737493
PJUD01010642
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1516
1589
+
Thr
TGT
[ENA]
¢þ
>WENV183739839
PJUF01000027
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
243359
243432
+
Thr
TGT
[ENA]
¢þ
>WENV183739908
PJUF01000064
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
120442
120515
+
Thr
TGT
[ENA]
¢þ
>WENV183740437
PJUF01002164
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1976
1903
-
Thr
TGT
[ENA]
¢þ
>WENV183743472
PJUJ01001844
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
784
711
-
Thr
TGT
[ENA]
¢þ
>WENV170002683
AGTN01100579
[AGTN] bioreactor metagenome; poplar biomass
80
7
-
Thr
TGT
[ENA]
¢þ
>WENV170155760
CEOG01107316
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1381
1454
+
Thr
TGT
[ENA]
¢þ
>WENV170360852
CETL01147233
[CETL] marine metagenome genome assembly TARA_112_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
229438
229511
+
Thr
TGT
[ENA]
¢þ
>WENV170365475
CETN01078379
[CETN] marine metagenome genome assembly TARA_122_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10346
10273
-
Thr
TGT
[ENA]
¢þ
>WENV170367973
CETP01211054
[CETP] marine metagenome genome assembly TARA_122_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
117368
117295
-
Thr
TGT
[ENA]
¢þ
>WENV170622019
FUWD013084246
[FUWD] metagenome; unknown
1362
1435
+
Thr
TGT
[ENA]
¢þ
>WENV170630225
FUWD013299373
[FUWD] metagenome; unknown
1737
1664
-
Thr
TGT
[ENA]
¢þ
>WENV170895727
MDTD01084122
[MDTD] marine metagenome; seawater
229490
229563
+
Thr
TGT
[ENA]
¢þ
>WENV170928182
MDTG01129385
[MDTG] marine metagenome; seawater
12708
12635
-
Thr
TGT
[ENA]
¢þ
>WENV170995637
MWWF01030772
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
82
155
+
Thr
TGT
[ENA]
¢þ
>C181094356
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
5219807
5219880
+
Thr
TGT
-
¡û
>C181177195
CP029346
Bacteroidota
Aquirufa nivalisilvae HME7025 [CP029346]
1246977
1246904
-
Thr
TGT
-
¡û
>C191096555
CP032869
Bacteroidota
Mucilaginibacter celer HYN0043 [CP032869]
4513986
4513913
-
Thr
TGT
-
¡û
>W141727646
JNFF01000112
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
1973
2046
+
Thr
TGT
[ENA]
¡û
>W1910377928
FUKU01000027
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
12481
12554
+
Thr
TGT
[ENA]
¡û
>W1910664181
MBTA01000009
Bacteroidota
Pelobium manganitolerans YS-25 [MBTA]
9554
9627
+
Thr
TGT
[ENA]
¡û
>C09108538
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
992931
993004
+
Thr
TGT
[Ensembl]
¡û
>W1911219787
NRSW01000001
Bacteroidota
Mucilaginibacter sp. MD40 [NRSW]
1682554
1682627
+
Thr
TGT
[ENA]
¡û
>W1911647393
QAJL01000002
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
253135
253062
-
Thr
TGT
[ENA]
¡û
>W1810090286
PGFJ01000001
Bacteroidota
Mucilaginibacter auburnensis DSM 28175 [PGFJ]
1160990
1161063
+
Thr
TGT
[ENA]
¡û
>W1810346490
PVBQ01000008
Bacteroidota
Sphingobacterium haloxyli 5JN-11 [PVBQ]
83172
83099
-
Thr
TGT
[ENA]
¡û
>W1810346581
PVBS01000001
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
766672
766599
-
Thr
TGT
[ENA]
¡û
>W1810364496
PVTH01000001
Bacteroidota
Arcticibacter pallidicorallinus CGMCC 1.9313 [PVTH]
47162
47237
+
Thr
TGT
[ENA]
¡û
>W1810405028
PYLS01000006
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
367458
367385
-
Thr
TGT
[ENA]
¡û
>W1810425956
PYVU01000695
Bacteroidota
Marivirga lumbricoides Z-D1-2 [PYVU]
280
353
+
Thr
TGT
[ENA]
¡û
>W1810474637
QAIL01000169
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
174
247
+
Thr
TGT
[ENA]
¡û
>W1810503921
QBKM01000006
Bacteroidota
Pedobacter sp. YR016 [QBKM]
113460
113533
+
Thr
TGT
[ENA]
¡û
>W1810564214
QEAS01000017
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
72402
72328
-
Thr
TGT
[ENA]
¡û
>W1810584224
QEYR01000017
Bacteroidota
Mucilaginibacter rubeus P1 [QEYR]
122434
122507
+
Thr
TGT
[ENA]
¡û
>W1810587244
QFKU01000012
Bacteroidota
Mucilaginibacter kameinonensis P4 [QFKU]
57943
57870
-
Thr
TGT
[ENA]
¡û
>W1810587291
QFKV01000021
Bacteroidota
Mucilaginibacter rubeus P3 [QFKV]
51912
51839
-
Thr
TGT
[ENA]
¡û
>W1810587333
QFKW01000022
Bacteroidota
Mucilaginibacter rubeus P2 [QFKW]
44125
44052
-
Thr
TGT
[ENA]
¡û
>W1810594599
QGDC01000001
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
485923
485850
-
Thr
TGT
[ENA]
¡û
>W1810597100
QGHA01000004
Bacteroidota
Mucilaginibacter oryzae DSM 19975 [QGHA]
235372
235445
+
Thr
TGT
[ENA]
¡û
>W1810676154
QKLU01000006
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
171990
172063
+
Thr
TGT
[ENA]
¡û
>W1810676166
QKLU01000009
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
184646
184719
+
Thr
TGT
[ENA]
¡û
>W1810676206
QKLV01000009
Bacteroidota
Mucilaginibacter sp. OV119 [QKLV]
44710
44637
-
Thr
TGT
[ENA]
¡û
>W1810686047
QKZT01000035
Bacteroidota
Algoriphagus chordae DSM 19830 [QKZT]
16523
16596
+
Thr
TGT
[ENA]
¡û
>W1810686068
QKZU01000007
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
164881
164808
-
Thr
TGT
[ENA]
¡û
>W1810693471
QLLK01000004
Bacteroidota
Algoriphagus yeomjeoni DSM 23446 [QLLK]
121441
121368
-
Thr
TGT
[ENA]
¡û
>W1810693894
QLLR01000017
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
52632
52705
+
Thr
TGT
[ENA]
¡û
>W1810753576
QPCG01000001
Bacteroidota
Mucilaginibacter endophyticus RS1 [QPCG]
233588
233661
+
Thr
TGT
[ENA]
¡û
>W1810885292
QUNF01000001
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
404008
403935
-
Thr
TGT
[ENA]
¡û
>W1810917797
QWDE01000003
Bacteroidota
Mucilaginibacter terrenus ZH6 [QWDE]
381448
381375
-
Thr
TGT
[ENA]
¡û
>W1511108340
JJMU01000072
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
65993
65920
-
Thr
TGT
[ENA]
¡û
>W1511387670
JSVA01000017
Bacteroidota
Roseivirga seohaensis D-25 [JSVA]
33153
33078
-
Thr
TGT
[ENA]
¡û
>W1511499227
JXAC01000010
Bacteroidota
Sphingobacterium sp. T2 [JXAC]
26490
26565
+
Thr
TGT
[ENA]
¡û
>W1511499270
JXAC01000172
Bacteroidota
Sphingobacterium sp. T2 [JXAC]
6858
6783
-
Thr
TGT
[ENA]
¡û
>C161049155
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
5432186
5432113
-
Thr
TGT
[Ensembl]
¡û
>C161049187
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
520370
520297
-
Thr
TGT
[Ensembl]
¡û
>C161073037
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
4084547
4084474
-
Thr
TGT
[Ensembl]
¡û
>W1610612126
LGEL01000049
Bacteroidota
Pedobacter panaciterrae [LGEL]
3742
3815
+
Thr
TGT
[ENA]
¡û
>W1610747818
LMXN01000002
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
120542
120615
+
Thr
TGT
[ENA]
¡û
>W1610870265
LQZQ01000045
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
303442
303517
+
Thr
TGT
[ENA]
¡û
>W1610875115
LRDB01000005
Bacteroidota
Roseivirga echinicomitans [LRDB]
58524
58597
+
Thr
TGT
[ENA]
¡û
>W1610888682
LRPB01000034
Bacteroidota
Roseivirga seohaensis [LRPB]
178389
178314
-
Thr
TGT
[ENA]
¡û
>W1610987073
LWHJ01000011
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
73745
73818
+
Thr
TGT
[ENA]
¡û
>W1710505643
FMTV01000003
Bacteroidota
Mucilaginibacter sp. NFR10 [FMTV]
367411
367338
-
Thr
TGT
[ENA]
¡û
>W1710515998
FNCG01000004
Bacteroidota
Mucilaginibacter gossypii [FNCG]
405894
405967
+
Thr
TGT
[ENA]
¡û
>W1710522103
FNGY01000013
Bacteroidota
Pedobacter steynii [FNGY]
9382
9455
+
Thr
TGT
[ENA]
¡û
>W1710522136
FNGZ01000003
Bacteroidota
Pedobacter antarcticus [FNGZ]
500804
500877
+
Thr
TGT
[ENA]
¡û
>W1710522567
FNHH01000004
Bacteroidota
Daejeonella rubra ruber [FNHH]
166804
166731
-
Thr
TGT
[ENA]
¡û
>W1710533314
FNRA01000011
Bacteroidota
Pedobacter hartonius [FNRA]
115406
115479
+
Thr
TGT
[ENA]
¡û
>W1710546822
FOCL01000006
Bacteroidota
Mucilaginibacter gossypiicola [FOCL]
354307
354380
+
Thr
TGT
[ENA]
¡û
>W1710554775
FOIR01000002
Bacteroidota
Roseivirga pacifica pacificus [FOIR]
121637
121710
+
Thr
TGT
[ENA]
¡û
>W1710556696
FOKK01000004
Bacteroidota
Algoriphagus aquimarinus [FOKK]
124514
124589
+
Thr
TGT
[ENA]
¡û
>W1710560887
FONS01000013
Bacteroidota
Pedobacter antarcticus [FONS]
103066
102993
-
Thr
TGT
[ENA]
¡û
>W1710573240
FOXH01000004
Bacteroidota
Pseudarcicella hirudinis [FOXH]
327503
327430
-
Thr
TGT
[ENA]
¡û
>W1710576362
FOZZ01000002
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
198301
198374
+
Thr
TGT
[ENA]
¡û
>W1710576383
FOZZ01000007
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
40216
40141
-
Thr
TGT
[ENA]
¡û
>W1710577016
FPAM01000001
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
588211
588138
-
Thr
TGT
[ENA]
¡û
>W1710577030
FPAM01000007
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
114421
114494
+
Thr
TGT
[ENA]
¡û
>W1710577967
FPBF01000001
Bacteroidota
Algoriphagus locisalis [FPBF]
1022542
1022467
-
Thr
TGT
[ENA]
¡û
>W1710583249
FQUQ01000003
Bacteroidota
Pedobacter caeni [FQUQ]
889693
889766
+
Thr
TGT
[ENA]
¡û
>W1710594203
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
1607474
1607547
+
Thr
TGT
[ENA]
¡û
>W1710602963
FUYR01000001
Bacteroidota
Daejeonella lutea luteus [FUYR]
103333
103406
+
Thr
TGT
[ENA]
¡û
>W1710733632
LGEL01000049
Bacteroidota
Pedobacter panaciterrae [LGEL]
3742
3815
+
Thr
TGT
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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