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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454972 (34 seq.)
>W1710943848
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
979078
979003
-
His
GTG
[ENA]
¡û
>W1711029713
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
979078
979003
-
His
GTG
[ENA]
¡û
>W1711065235
LSBQ01000003
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
80077
80152
+
His
GTG
[ENA]
¡û
>W1711126121
LUNZ01000049
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
43186
43261
+
His
GTG
[ENA]
¡û
>W1711356902
MDGT01000003
Gammaproteobacteria
Idiomarina sp. MD25a [MDGT]
917082
917157
+
His
GTG
[ENA]
¡û
>W131239234
BANL01000021
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
22859
22934
+
His
GTG
[ENA]
¡û
>C011054
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
1075141
1075066
-
His
GTG
[Ensembl]
¡û
>WENV180346154
OBLN01032571
[OBLN] sediment metagenome; sediment
572
647
+
His
GTG
[ENA]
¢þ
>WENV170136178
CENV01009133
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
41713
41638
-
His
GTG
[ENA]
¢þ
>WENV170345385
CETF01000677
[CETF] marine metagenome genome assembly TARA_109_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1662
1587
-
His
GTG
[ENA]
¢þ
>WENV170744279
LULX01000096
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
43186
43261
+
His
GTG
[ENA]
¢þ
>WENV170876648
MDTC01043969
[MDTC] marine metagenome; seawater
17
92
+
His
GTG
[ENA]
¢þ
>C181059199
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
1733425
1733350
-
His
GTG
-
¡û
>C181110277
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
246745
246670
-
His
GTG
-
¡û
>C181146693
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
844769
844844
+
His
GTG
-
¡û
>W1911585193
PIPS01000001
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
446904
446829
-
His
GTG
[ENA]
¡û
>W1911585324
PIPV01000001
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
177528
177603
+
His
GTG
[ENA]
¡û
>W1911585822
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
293356
293431
+
His
GTG
[ENA]
¡û
>W1911585929
PIQH01000004
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
13408
13483
+
His
GTG
[ENA]
¡û
>W1810609575
QGUA01000001
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
217430
217355
-
His
GTG
[ENA]
¡û
>W1810671365
QJST01000001
Gammaproteobacteria
Idiomarina fontislapidosi CECT 5859 [QJST]
177663
177738
+
His
GTG
[ENA]
¡û
>W1810706709
QMKJ01000001
Gammaproteobacteria
Aliidiomarina sp. B3213 [QMKJ]
71466
71541
+
His
GTG
[ENA]
¡û
>W1810785227
QRBK01000001
Gammaproteobacteria
Idiomarina abyssalis 017G.2 [QRBK]
876742
876667
-
His
GTG
[ENA]
¡û
>C131016302
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
1075256
1075181
-
His
GTG
[Ensembl]
¡û
>W1610616461
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
153843
153918
+
His
GTG
[ENA]
¡û
>W1610621738
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
217956
217881
-
His
GTG
[ENA]
¡û
>W1610800148
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
979078
979003
-
His
GTG
[ENA]
¡û
>W1610877981
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
979078
979003
-
His
GTG
[ENA]
¡û
>W1610906024
LSBQ01000003
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
80077
80152
+
His
GTG
[ENA]
¡û
>W1610937054
LUNZ01000049
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
43186
43261
+
His
GTG
[ENA]
¡û
>W1710515744
FNCB01000002
Gammaproteobacteria
Idiomarina zobellii [FNCB]
217829
217754
-
His
GTG
[ENA]
¡û
>W1710577919
FPBE01000001
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
154534
154609
+
His
GTG
[ENA]
¡û
>W1710741596
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
153843
153918
+
His
GTG
[ENA]
¡û
>W1710752611
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
217956
217881
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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