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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454974 (36 seq.)
>W1710943858
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
97584
97509
-
Val
TAC
[ENA]
¡û
>W1711029723
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
97584
97509
-
Val
TAC
[ENA]
¡û
>W1711126106
LUNZ01000032
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
991
1066
+
Val
TAC
[ENA]
¡û
>W1711126128
LUOA01000017
Gammaproteobacteria
Idiomarina sp. REDSEA-S27_B4 [LUOA]
36266
36191
-
Val
TAC
[ENA]
¡û
>W131239254
BANL01000026
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
83053
83128
+
Val
TAC
[ENA]
¡û
>C011023
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
1906133
1906208
+
Val
TAC
[Ensembl]
¡û
>WENV170136144
CENV01005296
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
36401
36326
-
Val
TAC
[ENA]
¢þ
>WENV170192781
CEPG01009463
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
152
77
-
Val
TAC
[ENA]
¢þ
>WENV170283356
CERU01002254
[CERU] marine metagenome genome assembly TARA_065_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1006
931
-
Val
TAC
[ENA]
¢þ
>WENV170739940
LULR01000038
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
36266
36191
-
Val
TAC
[ENA]
¢þ
>WENV170744315
LULX01000229
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
991
1066
+
Val
TAC
[ENA]
¢þ
>WENV170884999
MDTC01194140
[MDTC] marine metagenome; seawater
5698
5623
-
Val
TAC
[ENA]
¢þ
>C181059208
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
861392
861317
-
Val
TAC
-
¡û
>C181059209
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
861280
861205
-
Val
TAC
-
¡û
>C181110260
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
2000781
2000706
-
Val
TAC
-
¡û
>C181110261
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
2000669
2000594
-
Val
TAC
-
¡û
>C181146702
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
1896925
1897000
+
Val
TAC
-
¡û
>C181146703
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
1897037
1897112
+
Val
TAC
-
¡û
>W1911585212
PIPS01000005
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
40385
40460
+
Val
TAC
[ENA]
¡û
>W1911585213
PIPS01000005
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
40497
40572
+
Val
TAC
[ENA]
¡û
>W1911585579
PIQA01000001
Gammaproteobacteria
Idiomarina piscisalsi TPS4-2 [PIQA]
854117
854192
+
Val
TAC
[ENA]
¡û
>W1911585831
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
1228455
1228530
+
Val
TAC
[ENA]
¡û
>W1911585832
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
1228567
1228642
+
Val
TAC
[ENA]
¡û
>W1810609592
QGUA01000007
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
142545
142620
+
Val
TAC
[ENA]
¡û
>W1810785239
QRBK01000005
Gammaproteobacteria
Idiomarina abyssalis 017G.2 [QRBK]
51530
51605
+
Val
TAC
[ENA]
¡û
>C131016271
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
1906248
1906323
+
Val
TAC
[Ensembl]
¡û
>W1610616497
LGOW01000015
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
7889
7964
+
Val
TAC
[ENA]
¡û
>W1610621713
LHSG01000001
Gammaproteobacteria
Idiomarina zobellii [LHSG]
327966
328041
+
Val
TAC
[ENA]
¡û
>W1610800158
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
97584
97509
-
Val
TAC
[ENA]
¡û
>W1610877991
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
97584
97509
-
Val
TAC
[ENA]
¡û
>W1610937039
LUNZ01000032
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
991
1066
+
Val
TAC
[ENA]
¡û
>W1610937061
LUOA01000017
Gammaproteobacteria
Idiomarina sp. REDSEA-S27_B4 [LUOA]
36266
36191
-
Val
TAC
[ENA]
¡û
>W1710515721
FNCB01000001
Gammaproteobacteria
Idiomarina zobellii [FNCB]
326798
326873
+
Val
TAC
[ENA]
¡û
>W1710577927
FPBE01000001
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
992579
992654
+
Val
TAC
[ENA]
¡û
>W1710741632
LGOW01000015
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
7889
7964
+
Val
TAC
[ENA]
¡û
>W1710752586
LHSG01000001
Gammaproteobacteria
Idiomarina zobellii [LHSG]
327966
328041
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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