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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455028 (39 seq.)
>W1711055232
LRUK01000085
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
1503
1578
+
Trp
CCA
[ENA]
¡û
>W1711089913
LTAB01000061
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
1526
1601
+
Trp
CCA
[ENA]
¡û
>W1711250054
LYMJ01000065
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
1497
1572
+
Trp
CCA
[ENA]
¡û
>W1711384697
MEDI01000232
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
7361
7436
+
Trp
CCA
[ENA]
¡û
>W1712076997
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
396008
395933
-
Trp
CCA
[ENA]
¡û
>C171019730
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
250181
250106
-
Trp
CCA
-
¡û
>W131224758
AUDA01000236
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
32043
31968
-
Trp
CCA
[ENA]
¡û
>W131241103
BARE01000001
Alphaproteobacteria
Sphingobium xenophagum NBRC 107872 [BARE]
98518
98593
+
Trp
CCA
[ENA]
¡û
>W141076268
ATDO01000067
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
7265
7340
+
Trp
CCA
[ENA]
¡û
>W141231040
BATN01000096
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
12543
12618
+
Trp
CCA
[ENA]
¡û
>W141285069
JANF02000015
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
7265
7340
+
Trp
CCA
[ENA]
¡û
>WENV170136550
CENV01047566
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1040
1115
+
Trp
CCA
[ENA]
¢þ
>W141400555
JDRU02000710
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
5183
5108
-
Trp
CCA
[ENA]
¡û
>W141462306
JFHR01000023
Alphaproteobacteria
Sphingobium chlorophenolicum [JFHR]
59598
59523
-
Trp
CCA
[ENA]
¡û
>C181072115
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
2167620
2167545
-
Trp
CCA
-
¡û
>C191002603
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
1044934
1044859
-
Trp
CCA
-
¡û
>C191003778
AP018664
Alphaproteobacteria
Sphingobium amiense DSM 16289 [AP018664]
2076097
2076172
+
Trp
CCA
-
¡û
>C191185573
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
111994
111919
-
Trp
CCA
-
¡û
>W1910006988
BBQY01000001
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
1098514
1098439
-
Trp
CCA
[ENA]
¡û
>W1910649284
LXYF01000023
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
51461
51536
+
Trp
CCA
[ENA]
¡û
>W1810000475
BEWI01000032
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
630297
630372
+
Trp
CCA
[ENA]
¡û
>W1810400856
PYGL01000002
Alphaproteobacteria
Sphingobium sp. AEW4 [PYGL]
266170
266245
+
Trp
CCA
[ENA]
¡û
>C151074577
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
3029896
3029821
-
Trp
CCA
[Ensembl]
¡û
>W10126793
AEDK01000015
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
44938
45013
+
Trp
CCA
[ENA]
¡û
>C10111670
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
2720439
2720514
+
Trp
CCA
[Ensembl]
¡û
>C11119813
CP002799
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
83382
83457
+
Trp
CCA
[Ensembl]
¡û
>W11134054
AEDK01000015
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
44938
45013
+
Trp
CCA
[ENA]
¡û
>W1511646465
LECE01000039
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
11491
11566
+
Trp
CCA
[ENA]
¡û
>W1610072037
BCUN01000039
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
2415
2340
-
Trp
CCA
[ENA]
¡û
>W1610076920
BCZC01000219
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
15088
15163
+
Trp
CCA
[ENA]
¡û
>W121071139
AJXQ01000072
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
31362
31287
-
Trp
CCA
[ENA]
¡û
>W121084336
AKIB01000049
Alphaproteobacteria
Sphingobium xenophagum QYY [AKIB]
10759
10834
+
Trp
CCA
[ENA]
¡û
>W1610609171
LFVX01000038
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
28745
28820
+
Trp
CCA
[ENA]
¡û
>W1610896278
LRUK01000085
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
1503
1578
+
Trp
CCA
[ENA]
¡û
>W1610924257
LTAB01000061
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
1526
1601
+
Trp
CCA
[ENA]
¡û
>W1611016936
LYMJ01000065
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
1497
1572
+
Trp
CCA
[ENA]
¡û
>W1710069239
BCUN01000039
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
2415
2340
-
Trp
CCA
[ENA]
¡û
>W1710074609
BCZC01000219
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
15088
15163
+
Trp
CCA
[ENA]
¡û
>W1710730458
LFVX01000038
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
28745
28820
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK