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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455034 (88 seq.)
>W1710834848
LLJH01000009
Actinomycetota
Cutibacterium avidum [LLJH]
57412
57485
+
Ala
TGC
[ENA]
¡û
>W1710834934
LLJJ01000009
Actinomycetota
Cutibacterium avidum [LLJJ]
57540
57613
+
Ala
TGC
[ENA]
¡û
>W1711055707
LRVD01000003
Actinomycetota
Cutibacterium avidum [LRVD]
425215
425142
-
Ala
TGC
[ENA]
¡û
>W1711256137
LYSN01000002
Actinomycetota
Cutibacterium avidum [LYSN]
194953
194880
-
Ala
TGC
[ENA]
¡û
>C171044700
CP015970
Actinomycetota
Acidipropionibacterium acidipropionici F3E8 [CP015970]
2919604
2919529
-
Ala
TGC
-
¡û
>C171054399
CP016954
Actinomycetota
Cutibacterium avidum DPC 6544 [CP016954]
1450272
1450347
+
Ala
TGC
-
¡û
>C171092736
CP019400
Actinomycetota
Acidipropionibacterium acidipropionici WSH1105 [CP019400]
2716835
2716760
-
Ala
TGC
-
¡û
>W131206202
ATFM01000005
Actinomycetota
Propionibacterium sp. HGH0353 [ATFM]
495436
495361
-
Ala
TGC
[ENA]
¡û
>W131219751
ATYU01000046
Actinomycetota
Acidipropionibacterium acidipropionici DSM 4900 [ATYU]
4535
4610
+
Ala
TGC
[ENA]
¡û
>W131224931
AUDD01000021
Actinomycetota
Acidipropionibacterium jensenii DSM 20535 [AUDD]
44237
44312
+
Ala
TGC
[ENA]
¡û
>W131230875
AUHZ01000010
Actinomycetota
Acidipropionibacterium thoenii DSM 20276 [AUHZ]
1439
1364
-
Ala
TGC
[ENA]
¡û
>WENV180165524
OAVK01003868
[OAVK] human gut metagenome; faeces
1359
1284
-
Ala
TGC
[ENA]
¢þ
>WENV180190734
OAXA01000707
[OAXA] human gut metagenome; faeces
2893
2820
-
Ala
TGC
[ENA]
¢þ
>WENV180226756
OBBS01000158
[OBBS] human gut metagenome; Infant 2 DOL 17 gut
113
186
+
Ala
TGC
[ENA]
¢þ
>WENV180226903
OBBT01000019
[OBBT] human gut metagenome; Infant 2 DOL 16 gut
90812
90739
-
Ala
TGC
[ENA]
¢þ
>WENV180227700
OBBV01000011
[OBBV] human gut metagenome; Infant 2 DOL 24 gut
252590
252517
-
Ala
TGC
[ENA]
¢þ
>WENV180228006
OBBW01000009
[OBBW] human gut metagenome; Infant 2 DOL 28 gut
252590
252517
-
Ala
TGC
[ENA]
¢þ
>WENV180230034
OBCK01001196
[OBCK] human gut metagenome; human gut
122
49
-
Ala
TGC
[ENA]
¢þ
>WENV180241273
OBDG01000008
[OBDG] human gut metagenome; human gut
176517
176444
-
Ala
TGC
[ENA]
¢þ
>WENV180421491
OBVQ01003395
[OBVQ] human gut metagenome; faeces
58
131
+
Ala
TGC
[ENA]
¢þ
>WENV180493699
OBZZ01000203
[OBZZ] human gut metagenome; faeces
10475
10402
-
Ala
TGC
[ENA]
¢þ
>WENV180556346
OCJS01000004
[OCJS] human gut metagenome; Infant 2 DOL 18 gut
131031
131104
+
Ala
TGC
[ENA]
¢þ
>WENV180556621
OCJT01000006
[OCJT] human gut metagenome; Infant 2 DOL 19 gut
252590
252517
-
Ala
TGC
[ENA]
¢þ
>WENV180557078
OCJV01000007
[OCJV] human gut metagenome; Infant 2 DOL 20 gut
252590
252517
-
Ala
TGC
[ENA]
¢þ
>WENV180557339
OCJW01000007
[OCJW] human gut metagenome; Infant 2 DOL 21 gut
252590
252517
-
Ala
TGC
[ENA]
¢þ
>WENV180557635
OCJX01000006
[OCJX] human gut metagenome; Infant 2 DOL 22 gut
252590
252517
-
Ala
TGC
[ENA]
¢þ
>WENV180558754
OCKA01000011
[OCKA] human gut metagenome; Infant 2 DOL 25 gut
252590
252517
-
Ala
TGC
[ENA]
¢þ
>WENV180559246
OCKC01000008
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
252590
252517
-
Ala
TGC
[ENA]
¢þ
>WENV180559610
OCKD01000011
[OCKD] human gut metagenome; Infant 2 DOL 27 gut
252590
252517
-
Ala
TGC
[ENA]
¢þ
>WENV180561996
OCLA01000006
[OCLA] human gut metagenome; human gut
133560
133633
+
Ala
TGC
[ENA]
¢þ
>WENV180564458
OCLE01000007
[OCLE] human gut metagenome; human gut
176517
176444
-
Ala
TGC
[ENA]
¢þ
>WENV180566333
OCLI01000469
[OCLI] human gut metagenome; human gut
1420
1347
-
Ala
TGC
[ENA]
¢þ
>WENV180568733
OCLN01000539
[OCLN] human gut metagenome; human gut
572
645
+
Ala
TGC
[ENA]
¢þ
>WENV180568872
OCLO01000169
[OCLO] human gut metagenome; human gut
5186
5113
-
Ala
TGC
[ENA]
¢þ
>WENV180569046
OCLP01010786
[OCLP] human gut metagenome; human gut
158
231
+
Ala
TGC
[ENA]
¢þ
>WENV180623721
OCQF01001057
[OCQF] human gut metagenome; Infant 2 DOL 14 gut
912
839
-
Ala
TGC
[ENA]
¢þ
>WENV180624944
OCQI01000004
[OCQI] human gut metagenome; human gut
177730
177657
-
Ala
TGC
[ENA]
¢þ
>WENV180625084
OCQJ01000010
[OCQJ] human gut metagenome; human gut
177730
177657
-
Ala
TGC
[ENA]
¢þ
>WENV180639238
OCRJ01000024
[OCRJ] human gut metagenome; human gut
44631
44704
+
Ala
TGC
[ENA]
¢þ
>WENV181327336
OFLP01000682
[OFLP] metagenome; faeces
1344
1271
-
Ala
TGC
[ENA]
¢þ
>WENV181328245
OFLS01003449
[OFLS] metagenome; faeces
253
326
+
Ala
TGC
[ENA]
¢þ
>W141155942
AXMJ01000003
Actinomycetota
Propionibacterium sp. KPL1852 [AXMJ]
421594
421521
-
Ala
TGC
[ENA]
¡û
>W141156104
AXMN01000001
Actinomycetota
Propionibacterium sp. KPL1838 [AXMN]
444417
444490
+
Ala
TGC
[ENA]
¡û
>WENV181804510
OGSF01001836
[OGSF] human gut metagenome; fecal sample 3 from infant 5
668
741
+
Ala
TGC
[ENA]
¢þ
>WENV181806258
OGSK01000492
[OGSK] human gut metagenome; fecal sample 2 from infant 5
74
1
-
Ala
TGC
[ENA]
¢þ
>WENV181806689
OGSL01000850
[OGSL] human gut metagenome; fecal sample 6 from infant 5
1799
1726
-
Ala
TGC
[ENA]
¢þ
>WENV181810263
OGSU01011377
[OGSU] human gut metagenome; fecal sample 7 from infant 5
521
448
-
Ala
TGC
[ENA]
¢þ
>WENV181821318
OGUE01000535
[OGUE] human gut metagenome; fecal sample 1 from infant 5
7829
7902
+
Ala
TGC
[ENA]
¢þ
>WENV182643175
OJLS01002820
[OJLS] metagenome; surface
465
540
+
Ala
TGC
[ENA]
¢þ
>WENV182807387
OJVW01000288
[OJVW] human gut metagenome; human gut
4849
4776
-
Ala
TGC
[ENA]
¢þ
>WENV182809634
OJWS01000003
[OJWS] human gut metagenome; human gut
134990
135065
+
Ala
TGC
[ENA]
¢þ
>WENV182814134
OJYH01000035
[OJYH] human gut metagenome; human gut
13851
13778
-
Ala
TGC
[ENA]
¢þ
>WENV182815335
OJYQ01001795
[OJYQ] human gut metagenome; human gut
98
23
-
Ala
TGC
[ENA]
¢þ
>WENV182817467
OJZM01000011
[OJZM] human gut metagenome; human gut
29763
29688
-
Ala
TGC
[ENA]
¢þ
>WENV182841384
OKHV01000021
[OKHV] human gut metagenome; human gut
56212
56139
-
Ala
TGC
[ENA]
¢þ
>WENV182842628
OKIF01000219
[OKIF] human gut metagenome; human gut
16012
16087
+
Ala
TGC
[ENA]
¢þ
>WENV182851154
OKLL01000001
[OKLL] human gut metagenome; human gut
159973
159900
-
Ala
TGC
[ENA]
¢þ
>WENV182857357
OKNX01000046
[OKNX] human gut metagenome; human gut
20050
19975
-
Ala
TGC
[ENA]
¢þ
>WENV182858079
OKOC01000016
[OKOC] human gut metagenome; human gut
13884
13811
-
Ala
TGC
[ENA]
¢þ
>WENV182860516
OKOW01003454
[OKOW] human gut metagenome; human gut
122
49
-
Ala
TGC
[ENA]
¢þ
>WENV182860589
OKOX01000032
[OKOX] human gut metagenome; human gut
111421
111494
+
Ala
TGC
[ENA]
¢þ
>WENV182944268
OKVI01010812
[OKVI] human gut metagenome; human gut
4
79
+
Ala
TGC
[ENA]
¢þ
>WENV182944277
OKVI01011840
[OKVI] human gut metagenome; human gut
4
77
+
Ala
TGC
[ENA]
¢þ
>WENV182952777
OKVW01019832
[OKVW] human gut metagenome; human gut
435
508
+
Ala
TGC
[ENA]
¢þ
>WENV183511789
OMJG01004427
[OMJG] food metagenome; Cotija cheese
77
2
-
Ala
TGC
[ENA]
¢þ
>C191030090
CP025198
Actinomycetota
Acidipropionibacterium virtanenii JS278 [CP025198]
3111363
3111438
+
Ala
TGC
-
¡û
>C191036555
CP025570
Actinomycetota
Acidipropionibacterium jensenii JS280 [CP025570]
2697124
2697199
+
Ala
TGC
-
¡û
>C191036600
CP025571
Actinomycetota
Acidipropionibacterium jensenii JS279 [CP025571]
2693808
2693883
+
Ala
TGC
-
¡û
>C191073486
CP031057
Actinomycetota
Acidipropionibacterium acidipropionici WGS7 [CP031057]
3562010
3562085
+
Ala
TGC
-
¡û
>C191180464
CP040634
Actinomycetota
Acidipropionibacterium acidipropionici FAM 19036 [CP040634]
2871328
2871403
+
Ala
TGC
-
¡û
>C191180497
CP040635
Actinomycetota
Acidipropionibacterium jensenii FAM 19038 [CP040635]
825190
825265
+
Ala
TGC
-
¡û
>C191211319
LR134473
Actinomycetota
Acidipropionibacterium jensenii NCTC13652 [LR134473]
1478156
1478230
+
Ala
TGC
-
¡û
>W1910852668
NBIO01000003
Actinomycetota
Cutibacterium avidum CI878 [NBIO]
57422
57495
+
Ala
TGC
[ENA]
¡û
>W1910852697
NBIO01000042
Actinomycetota
Cutibacterium avidum CI878 [NBIO]
662
735
+
Ala
TGC
[ENA]
¡û
>W1910852698
NBIO01000042
Actinomycetota
Cutibacterium avidum CI878 [NBIO]
461
388
-
Ala
TGC
[ENA]
¡û
>W1910852704
NBIP01000002
Actinomycetota
Cutibacterium avidum CI882 [NBIP]
335910
335837
-
Ala
TGC
[ENA]
¡û
>W1910852771
NBIQ01000004
Actinomycetota
Cutibacterium avidum CI828 [NBIQ]
335824
335751
-
Ala
TGC
[ENA]
¡û
>W1910852821
NBIR01000005
Actinomycetota
Cutibacterium avidum CI855 [NBIR]
57447
57520
+
Ala
TGC
[ENA]
¡û
>W1910852856
NBIS01000003
Actinomycetota
Cutibacterium avidum CI853 [NBIS]
134155
134228
+
Ala
TGC
[ENA]
¡û
>W1911137648
NOWI01000001
Actinomycetota
Cutibacterium avidum P16-029 [NOWI]
137166
137239
+
Ala
TGC
[ENA]
¡û
>C161051558
CP013126
Actinomycetota
Acidipropionibacterium acidipropionici CGMCC 1.2230 [CP013126]
572575
572650
+
Ala
TGC
-
¡û
>C161071878
CP014352
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 55737 [CP014352]
2620968
2620893
-
Ala
TGC
[Ensembl]
¡û
>C131003894
CP003493
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 4875 [CP003493]
503709
503634
-
Ala
TGC
[Ensembl]
¡û
>C131015019
CP005287
Actinomycetota
Cutibacterium avidum 44067 [CP005287]
2187422
2187495
+
Ala
TGC
[Ensembl]
¡û
>W1610896753
LRVD01000003
Actinomycetota
Cutibacterium avidum [LRVD]
425215
425142
-
Ala
TGC
[ENA]
¡û
>W1610958216
LVJK01000028
Actinomycetota
Cutibacterium avidum HL083PV1 [LVJK]
22090
22163
+
Ala
TGC
[ENA]
¡û
>W1611019513
LYSN01000002
Actinomycetota
Cutibacterium avidum [LYSN]
194953
194880
-
Ala
TGC
[ENA]
¡û
>WENV086010
BABE01000275
Gut microbiome of Human (healthy human sample In-E, Infant, Male)
7199
7124
-
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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