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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455115 (52 seq.)
>W1710827191
LLEX01000175
Alphaproteobacteria
Porphyrobacter sp. HL-46 [LLEX]
2057
1982
-
Lys
TTT
[ENA]
¡û
>W1711073697
LSIV01000090
Alphaproteobacteria
Caulobacter sp. CCH4-E1 [LSIV]
54471
54396
-
Lys
TTT
[ENA]
¡û
>W1711073951
LSJB01000308
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
50
125
+
Lys
TTT
[ENA]
¡û
>W1711074271
LSJJ01000106
Alphaproteobacteria
Erythrobacter donghaensis [LSJJ]
79755
79680
-
Lys
TTT
[ENA]
¡û
>W1711074337
LSJK01000288
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
50
125
+
Lys
TTT
[ENA]
¡û
>W1711074561
LSJQ01000394
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
787
712
-
Lys
TTT
[ENA]
¡û
>W1711074635
LSJS01000100
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
765
690
-
Lys
TTT
[ENA]
¡û
>W1711074968
LSJZ01000380
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
11774
11699
-
Lys
TTT
[ENA]
¡û
>W1711075530
LSKM01000073
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
787
712
-
Lys
TTT
[ENA]
¡û
>W1711075703
LSKQ01000173
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
29807
29732
-
Lys
TTT
[ENA]
¡û
>W1711292845
LZYB01000006
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
74223
74298
+
Lys
TTT
[ENA]
¡û
>W1711385233
MEDW01000078
Alphaproteobacteria
Erythrobacter sp. SCN 62-14 [MEDW]
7921
7846
-
Lys
TTT
[ENA]
¡û
>W131058804
ANFX01000050
Alphaproteobacteria
Porphyrobacter sp. AAP82 [ANFX]
25041
24966
-
Lys
TTT
[ENA]
¡û
>W1711766275
MUYG01000006
Alphaproteobacteria
Erythrobacter donghaensis [MUYG]
22611
22536
-
Lys
TTT
[ENA]
¡û
>W1711766357
MUYH01000015
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
492
417
-
Lys
TTT
[ENA]
¡û
>W1711766364
MUYI01000001
Alphaproteobacteria
Erythrobacter dokdonensis [MUYI]
1155287
1155362
+
Lys
TTT
[ENA]
¡û
>W1711766422
MUYJ01000005
Alphaproteobacteria
Erythrobacter tepidarius [MUYJ]
124087
124012
-
Lys
TTT
[ENA]
¡û
>W1711766479
MUYK01000006
Alphaproteobacteria
Erythrobacter colymbi [MUYK]
25297
25372
+
Lys
TTT
[ENA]
¡û
>C171056593
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
1640664
1640589
-
Lys
TTT
-
¡û
>C171057322
CP017113
Alphaproteobacteria
Porphyrobacter sp. LM 6 [CP017113]
733576
733651
+
Lys
TTT
-
¡û
>WENV181226956
OFDN01000567
[OFDN] hot springs metagenome; Water
13826
13751
-
Lys
TTT
[ENA]
¢þ
>WENV181234538
OFEU01000305
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
28129
28204
+
Lys
TTT
[ENA]
¢þ
>WENV183730405
PJTS01000005
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
138019
137944
-
Lys
TTT
[ENA]
¢þ
>WENV183731556
PJTT01000022
[PJTT] soil metagenome; Soil (2) enriched on wood chips
138019
137944
-
Lys
TTT
[ENA]
¢þ
>WENV170121313
CENL01105042
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
217
292
+
Lys
TTT
[ENA]
¢þ
>W141484927
JFYZ01000002
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
293151
293226
+
Lys
TTT
[ENA]
¡û
>C181069555
CP022600
Alphaproteobacteria
Porphyrobacter sp. HT-58-2 [CP022600]
837380
837455
+
Lys
TTT
-
¡û
>C191188851
CP041222
Alphaproteobacteria
Porphyrobacter sp. YT40 [CP041222]
291068
290993
-
Lys
TTT
-
¡û
>W141820322
JQMU01000001
Alphaproteobacteria
Porphyrobacter sp. HL-46 [JQMU]
977795
977720
-
Lys
TTT
[ENA]
¡û
>W1910651525
LYMM01000062
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
683
608
-
Lys
TTT
[ENA]
¡û
>C151048368
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
3518318
3518393
+
Lys
TTT
[Ensembl]
¡û
>W1510024399
CCBH010000174
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
59058
59133
+
Lys
TTT
[ENA]
¡û
>C11116172
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
2077556
2077631
+
Lys
TTT
[Ensembl]
¡û
>W1511590529
LBHB01000002
Alphaproteobacteria
Aurantiacibacter luteus KA37 [LBHB]
803319
803394
+
Lys
TTT
[ENA]
¡û
>C161093665
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
1365555
1365630
+
Lys
TTT
[Ensembl]
¡û
>W1610071225
BCTX01000015
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
10393
10468
+
Lys
TTT
[ENA]
¡û
>W121009682
AGFM01000008
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
107178
107103
-
Lys
TTT
[ENA]
¡û
>W121119242
ALVC01000301
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
1934
1859
-
Lys
TTT
[ENA]
¡û
>W1610690468
LLEX01000175
Alphaproteobacteria
Porphyrobacter sp. HL-46 [LLEX]
2057
1982
-
Lys
TTT
[ENA]
¡û
>W1610913002
LSIV01000090
Alphaproteobacteria
Caulobacter sp. CCH4-E1 [LSIV]
54471
54396
-
Lys
TTT
[ENA]
¡û
>W1610913256
LSJB01000308
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
50
125
+
Lys
TTT
[ENA]
¡û
>W1610913576
LSJJ01000106
Alphaproteobacteria
Erythrobacter donghaensis [LSJJ]
79755
79680
-
Lys
TTT
[ENA]
¡û
>W1610913642
LSJK01000288
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
50
125
+
Lys
TTT
[ENA]
¡û
>W1610913866
LSJQ01000394
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
787
712
-
Lys
TTT
[ENA]
¡û
>W1610913940
LSJS01000100
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
765
690
-
Lys
TTT
[ENA]
¡û
>W1610914273
LSJZ01000380
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
11774
11699
-
Lys
TTT
[ENA]
¡û
>W1610914835
LSKM01000073
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
787
712
-
Lys
TTT
[ENA]
¡û
>W1610915008
LSKQ01000173
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
29807
29732
-
Lys
TTT
[ENA]
¡û
>W1611050061
LZYB01000006
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
74223
74298
+
Lys
TTT
[ENA]
¡û
>W1710068590
BCTX01000015
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
10393
10468
+
Lys
TTT
[ENA]
¡û
>W1710593230
FRDF01000016
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
97427
97502
+
Lys
TTT
[ENA]
¡û
>W1710604551
FVZE01000001
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
383648
383723
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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