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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455136 (106 seq.)
>W1710861727
LMDV01000010
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
245842
245767
-
Thr
CGT
[ENA]
¡û
>W1710867748
LMIN01000011
Actinomycetota
Nocardioides sp. Root224 [LMIN]
247498
247423
-
Thr
CGT
[ENA]
¡û
>W1711018573
LQXA01000039
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
41329
41404
+
Thr
CGT
[ENA]
¡û
>W1711066580
LSCY01000013
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
266029
266104
+
Thr
CGT
[ENA]
¡û
>W1711079608
LSOE01000008
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
100241
100316
+
Thr
CGT
[ENA]
¡û
>W1711357196
MDHB01000003
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
29957
29882
-
Thr
CGT
[ENA]
¡û
>W1711357208
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
1051208
1051283
+
Thr
CGT
[ENA]
¡û
>W1711357255
MDHD01000048
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
362
287
-
Thr
CGT
[ENA]
¡û
>W1711357304
MDHE01000158
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
7079
7154
+
Thr
CGT
[ENA]
¡û
>W1711357354
MDHF01000114
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
338
263
-
Thr
CGT
[ENA]
¡û
>W1711357396
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
2628843
2628918
+
Thr
CGT
[ENA]
¡û
>W1711357465
MDHH01000008
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
250445
250520
+
Thr
CGT
[ENA]
¡û
>W1711357477
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
625910
625985
+
Thr
CGT
[ENA]
¡û
>W1711357522
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
939554
939629
+
Thr
CGT
[ENA]
¡û
>W1711357565
MDHK01000014
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
30370
30295
-
Thr
CGT
[ENA]
¡û
>W1711357612
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
1080498
1080573
+
Thr
CGT
[ENA]
¡û
>W1711357657
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
1061382
1061457
+
Thr
CGT
[ENA]
¡û
>W1711360696
MDJW01000007
Actinomycetota
Clavibacter michiganensis [MDJW]
636524
636449
-
Thr
CGT
[ENA]
¡û
>W1711360736
MDJX01000079
Actinomycetota
Clavibacter michiganensis [MDJX]
22751
22826
+
Thr
CGT
[ENA]
¡û
>W1711360802
MDJY01000051
Actinomycetota
Clavibacter michiganensis [MDJY]
36000
36075
+
Thr
CGT
[ENA]
¡û
>W1711360833
MDJZ01000005
Actinomycetota
Clavibacter michiganensis [MDJZ]
337887
337812
-
Thr
CGT
[ENA]
¡û
>W131190773
ASEP01000015
Actinomycetota
Nocardioides sp. CF8 [ASEP]
26819
26894
+
Thr
CGT
[ENA]
¡û
>C006139
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
1072979
1073054
+
Thr
CGT
[Ensembl]
¡û
>WENV180016050
FSTY01000381
[FSTY] metagenome; soil
2482
2409
-
Thr
CGT
[ENA]
¢þ
>WENV180016058
FSTY01000460
[FSTY] metagenome; soil
3309
3235
-
Thr
CGT
[ENA]
¢þ
>WENV180016682
FSVT01000033
[FSVT] metagenome; soil
3479
3404
-
Thr
CGT
[ENA]
¢þ
>WENV180017641
FSXL01000119
[FSXL] metagenome; soil
24
99
+
Thr
CGT
[ENA]
¢þ
>WENV180017673
FSXL01000596
[FSXL] metagenome; soil
26569
26644
+
Thr
CGT
[ENA]
¢þ
>WENV180030903
FTJN01427998
[FTJN] metagenome; soil
114
40
-
Thr
CGT
[ENA]
¢þ
>WENV180033460
FTKK01000497
[FTKK] metagenome; soil
74
1
-
Thr
CGT
[ENA]
¢þ
>WENV180304516
OBJI01098809
[OBJI] soil metagenome; soil
195
270
+
Thr
CGT
[ENA]
¢þ
>WENV180765565
ODIC01000051
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
9267
9342
+
Thr
CGT
[ENA]
¢þ
>WENV180878662
ODLX01002689
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
1214
1289
+
Thr
CGT
[ENA]
¢þ
>WENV180984459
ODVG01001408
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
637
712
+
Thr
CGT
[ENA]
¢þ
>WENV181131785
OEGD01031842
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
161
86
-
Thr
CGT
[ENA]
¢þ
>WENV181166383
OEIU01000182
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
158
84
-
Thr
CGT
[ENA]
¢þ
>WENV181810256
OGSU01010298
[OGSU] human gut metagenome; fecal sample 7 from infant 5
344
419
+
Thr
CGT
[ENA]
¢þ
>W141212781
AZQZ01000005
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
44384
44459
+
Thr
CGT
[ENA]
¡û
>WENV182628962
OJKR01000125
[OJKR] metagenome; surface
14285
14210
-
Thr
CGT
[ENA]
¢þ
>WENV182636262
OJKZ01001747
[OJKZ] metagenome; surface
1605
1680
+
Thr
CGT
[ENA]
¢þ
>WENV182640328
OJLB01003042
[OJLB] metagenome; surface
1643
1718
+
Thr
CGT
[ENA]
¢þ
>WENV182641544
OJLI01000463
[OJLI] metagenome; surface
335
260
-
Thr
CGT
[ENA]
¢þ
>WENV182641776
OJLK01000321
[OJLK] metagenome; surface
368
443
+
Thr
CGT
[ENA]
¢þ
>WENV182643094
OJLS01000677
[OJLS] metagenome; surface
4516
4441
-
Thr
CGT
[ENA]
¢þ
>WENV182643172
OJLS01002598
[OJLS] metagenome; surface
919
994
+
Thr
CGT
[ENA]
¢þ
>WENV182643580
OJLW01000124
[OJLW] metagenome; surface
31265
31340
+
Thr
CGT
[ENA]
¢þ
>WENV182643761
OJLW01000992
[OJLW] metagenome; surface
2185
2110
-
Thr
CGT
[ENA]
¢þ
>WENV182644516
OJLX01001631
[OJLX] metagenome; surface
643
718
+
Thr
CGT
[ENA]
¢þ
>WENV182644825
OJLY01000480
[OJLY] metagenome; surface
20390
20465
+
Thr
CGT
[ENA]
¢þ
>WENV182644892
OJLY01000654
[OJLY] metagenome; surface
15765
15840
+
Thr
CGT
[ENA]
¢þ
>WENV182645613
OJLZ01000112
[OJLZ] metagenome; surface
15846
15771
-
Thr
CGT
[ENA]
¢þ
>WENV182646325
OJMA01002290
[OJMA] metagenome; surface
80
155
+
Thr
CGT
[ENA]
¢þ
>C08003534
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
229916
229991
+
Thr
CGT
[Ensembl]
¡û
>WENV182671578
OJNM01000310
[OJNM] metagenome; surface
13864
13939
+
Thr
CGT
[ENA]
¢þ
>WENV182797775
OJTB01001679
[OJTB] human gut metagenome; human gut
547
472
-
Thr
CGT
[ENA]
¢þ
>WENV182803003
OJUH01000057
[OJUH] human gut metagenome; human gut
23017
22942
-
Thr
CGT
[ENA]
¢þ
>WENV182835535
OKFO01000072
[OKFO] human gut metagenome; human gut
30322
30397
+
Thr
CGT
[ENA]
¢þ
>WENV183697766
OUNK010072571
[OUNK] metagenome; soil
827
902
+
Thr
CGT
[ENA]
¢þ
>WENV170700544
LIDZ01015202
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
9475
9550
+
Thr
CGT
[ENA]
¢þ
>C181048895
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
2373788
2373713
-
Thr
CGT
-
¡û
>C181048917
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
785889
785964
+
Thr
CGT
-
¡û
>C181143967
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
441878
441953
+
Thr
CGT
-
¡û
>W141564326
JIAR01000010
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
154100
154025
-
Thr
CGT
[ENA]
¡û
>W1910141242
BIFF01000002
Actinomycetota
Nocardioides sp. LS1 [BIFF]
840543
840470
-
Thr
CGT
[ENA]
¡û
>W1910839669
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
2427951
2428026
+
Thr
CGT
[ENA]
¡û
>W1910839707
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
2019813
2019888
+
Thr
CGT
[ENA]
¡û
>W1910839757
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
2646818
2646743
-
Thr
CGT
[ENA]
¡û
>W1910839801
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
3287180
3287105
-
Thr
CGT
[ENA]
¡û
>W1910839824
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
15340
15265
-
Thr
CGT
[ENA]
¡û
>W1910839867
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
214072
213997
-
Thr
CGT
[ENA]
¡û
>C09103339
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
2296932
2296857
-
Thr
CGT
[Ensembl]
¡û
>W1911596603
PNHH01000006
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
241
166
-
Thr
CGT
[ENA]
¡û
>W1911748166
QWDZ01000376
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
2222
2297
+
Thr
CGT
[ENA]
¡û
>W1911748205
QWEA01000566
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
367
292
-
Thr
CGT
[ENA]
¡û
>W1911748240
QWEB01000102
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
349
274
-
Thr
CGT
[ENA]
¡û
>W1911748296
QWEC01000308
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
2764
2839
+
Thr
CGT
[ENA]
¡û
>W1911748335
QWED01000396
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
341
266
-
Thr
CGT
[ENA]
¡û
>W1911748376
QWEE01000117
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
7084
7159
+
Thr
CGT
[ENA]
¡û
>W1911749600
QWGS01000397
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
135
210
+
Thr
CGT
[ENA]
¡û
>W1911749633
QWGT01000101
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
2425
2350
-
Thr
CGT
[ENA]
¡û
>W1911749678
QWGU01000171
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
2850
2925
+
Thr
CGT
[ENA]
¡û
>W1911749728
QWGV01000329
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
2879
2954
+
Thr
CGT
[ENA]
¡û
>W1810169235
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
1930250
1930324
+
Thr
CGT
[ENA]
¡û
>W1810277250
PSTR01000010
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
101220
101295
+
Thr
CGT
[ENA]
¡û
>W1810277297
PSTS01000019
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
18362
18287
-
Thr
CGT
[ENA]
¡û
>W1810277407
PSTV01000012
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
100419
100494
+
Thr
CGT
[ENA]
¡û
>W1810277451
PSTW01000012
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
168723
168798
+
Thr
CGT
[ENA]
¡û
>W1810282089
PSXY01000017
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
18270
18195
-
Thr
CGT
[ENA]
¡û
>W1810364727
PVTL01000010
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
30135
30210
+
Thr
CGT
[ENA]
¡û
>W1810462599
PZYX01000001
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
76976
77051
+
Thr
CGT
[ENA]
¡û
>W1810568844
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
2299220
2299295
+
Thr
CGT
[ENA]
¡û
>W1810573658
QEKX01000001
Actinomycetota
Promicromonospora sukumoe SAI-064 [QEKX]
448320
448394
+
Thr
CGT
[ENA]
¡û
>W1810860779
QTTK01000001
Actinomycetota
Clavibacter sp. 199 [QTTK]
173009
172934
-
Thr
CGT
[ENA]
¡û
>C151075658
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
2454358
2454283
-
Thr
CGT
[Ensembl]
¡û
>C151095694
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
872681
872756
+
Thr
CGT
-
¡û
>W1511352443
JROD01000007
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
133386
133311
-
Thr
CGT
[ENA]
¡û
>W1511523840
JYCR01000006
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
94671
94596
-
Thr
CGT
[ENA]
¡û
>W1511523933
JYDD01000001
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
81562
81637
+
Thr
CGT
[ENA]
¡û
>W1511570076
LAKL01000010
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
89007
89082
+
Thr
CGT
[ENA]
¡û
>C131019526
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
913811
913886
+
Thr
CGT
[Ensembl]
¡û
>W1610724073
LMDV01000010
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
245842
245767
-
Thr
CGT
[ENA]
¡û
>W1610730094
LMIN01000011
Actinomycetota
Nocardioides sp. Root224 [LMIN]
247498
247423
-
Thr
CGT
[ENA]
¡û
>W1610867049
LQXA01000039
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
41329
41404
+
Thr
CGT
[ENA]
¡û
>W1610907150
LSCY01000013
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
266029
266104
+
Thr
CGT
[ENA]
¡û
>W1610918518
LSOE01000008
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
100241
100316
+
Thr
CGT
[ENA]
¡û
>W1710604641
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
851860
851935
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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