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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455170 (92 seq.)
>W1710875208
LMOE01000010
Gammaproteobacteria
Acinetobacter sp. Leaf130 [LMOE]
86937
87012
+
Gly
TCC
[ENA]
¡û
>W1711004850
LQMV01000010
Gammaproteobacteria
Acinetobacter calcoaceticus [LQMV]
86342
86417
+
Gly
TCC
[ENA]
¡û
>W1711088976
LSZG01000040
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
197768
197843
+
Gly
TCC
[ENA]
¡û
>W1711089043
LSZH01000015
Gammaproteobacteria
Acinetobacter sp. SFB [LSZH]
221614
221689
+
Gly
TCC
[ENA]
¡û
>W1711116228
LUAW01000006
Gammaproteobacteria
Acinetobacter pragensis ANC 4149 [LUAW]
572
497
-
Gly
TCC
[ENA]
¡û
>W1711126495
LUOQ01000134
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S29_B6 [LUOQ]
52641
52566
-
Gly
TCC
[ENA]
¡û
>W1711126637
LUOV01000025
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 [LUOV]
52614
52539
-
Gly
TCC
[ENA]
¡û
>W1711269230
LZDS01000001
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
78650
78575
-
Gly
TCC
[ENA]
¡û
>W1711324194
MBDL01000001
Gammaproteobacteria
Acinetobacter celticus ANC 4603 [MBDL]
300915
300840
-
Gly
TCC
[ENA]
¡û
>W1711333421
MBPQ02000038
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 WCHA34 [MBPQ]
904
829
-
Gly
TCC
[ENA]
¡û
>W1712003170
NEGB01000001
Gammaproteobacteria
Acinetobacter silvestris ANC 4999 [NEGB]
159708
159633
-
Gly
TCC
[ENA]
¡û
>W1712003237
NEGC01000001
Gammaproteobacteria
Acinetobacter sp. ANC 4470 [NEGC]
452285
452210
-
Gly
TCC
[ENA]
¡û
>W1712003477
NEGF01000006
Gammaproteobacteria
Acinetobacter terrae ANC 4655 [NEGF]
195841
195916
+
Gly
TCC
[ENA]
¡û
>W1712003697
NEGI01000006
Gammaproteobacteria
Acinetobacter sp. ANC 4648 [NEGI]
150247
150172
-
Gly
TCC
[ENA]
¡û
>W1712003769
NEGJ01000011
Gammaproteobacteria
Acinetobacter sp. ANC 3832 [NEGJ]
567
492
-
Gly
TCC
[ENA]
¡û
>W1712003850
NEGK01000015
Gammaproteobacteria
Acinetobacter sp. ANC 3813 [NEGK]
628
553
-
Gly
TCC
[ENA]
¡û
>W1712003903
NEGL01000004
Gammaproteobacteria
Acinetobacter sp. ANC 4654 [NEGL]
591
516
-
Gly
TCC
[ENA]
¡û
>W1712003974
NEGM01000004
Gammaproteobacteria
Acinetobacter sp. ANC 4973 [NEGM]
225097
225022
-
Gly
TCC
[ENA]
¡û
>W131041648
AMIW01000014
Gammaproteobacteria
Acinetobacter calcoaceticus TG19585 [AMIW]
376
301
-
Gly
TCC
[ENA]
¡û
>W131041721
AMIX01000009
Gammaproteobacteria
Acinetobacter calcoaceticus TG19588 [AMIX]
376
301
-
Gly
TCC
[ENA]
¡û
>W131041781
AMIY01000005
Gammaproteobacteria
Acinetobacter calcoaceticus TG19593 [AMIY]
87102
87177
+
Gly
TCC
[ENA]
¡û
>W131046882
AMSS01000072
Gammaproteobacteria
Acinetobacter sp. WC-141 WC-141 [AMSS]
88940
89015
+
Gly
TCC
[ENA]
¡û
>W131112628
APOE01000005
Gammaproteobacteria
Acinetobacter calcoaceticus NIPH 13 [APOE]
197175
197250
+
Gly
TCC
[ENA]
¡û
>W131112836
APOH01000009
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
144319
144244
-
Gly
TCC
[ENA]
¡û
>W131114008
APOY01000008
Gammaproteobacteria
Acinetobacter sp. ANC 3789 [APOY]
208967
208892
-
Gly
TCC
[ENA]
¡û
>W131114497
APPF01000031
Gammaproteobacteria
Acinetobacter sp. NIPH 817 [APPF]
324331
324256
-
Gly
TCC
[ENA]
¡û
>W131116080
APQD01000002
Gammaproteobacteria
Acinetobacter bouvetii DSM 14964 = CIP 107468 [APQD]
225321
225396
+
Gly
TCC
[ENA]
¡û
>W131116384
APQH01000003
Gammaproteobacteria
Acinetobacter calcoaceticus ANC 3680 [APQH]
376386
376311
-
Gly
TCC
[ENA]
¡û
>W131116461
APQI01000002
Gammaproteobacteria
Acinetobacter calcoaceticus DSM 30006 = CIP 81.8 [APQI]
404735
404660
-
Gly
TCC
[ENA]
¡û
>W131116564
APQJ01000011
Gammaproteobacteria
Acinetobacter calcoaceticus ANC 3811 [APQJ]
391558
391483
-
Gly
TCC
[ENA]
¡û
>W131119721
APSC01000004
Gammaproteobacteria
Acinetobacter sp. NIPH 542 [APSC]
122460
122535
+
Gly
TCC
[ENA]
¡û
>W131169077
AREL01000007
Gammaproteobacteria
Acinetobacter bouvetii DSM 14964 = CIP 107468 [AREL]
745
670
-
Gly
TCC
[ENA]
¡û
>W131206987
ATGI01000041
Gammaproteobacteria
Acinetobacter rudis CIP 110305 [ATGI]
14615
14540
-
Gly
TCC
[ENA]
¡û
>C171018844
CP012808
Gammaproteobacteria
Acinetobacter equi 114 [CP012808]
596354
596279
-
Gly
TCC
-
¡û
>C171102552
CP020000
Gammaproteobacteria
Acinetobacter calcoaceticus CA16 [CP020000]
267634
267709
+
Gly
TCC
-
¡û
>WENV180395872
OBPT01219239
[OBPT] marine metagenome; ENVO:00002010 seawater
175
100
-
Gly
TCC
[ENA]
¢þ
>WENV181379297
OFRD01000351
[OFRD] wastewater metagenome; Exp Tend CN 100WW
3776
3851
+
Gly
TCC
[ENA]
¢þ
>W141177229
AYER01000007
Gammaproteobacteria
Acinetobacter nectaris CIP 110549 [AYER]
191308
191233
-
Gly
TCC
[ENA]
¡û
>W141177294
AYES01000007
Gammaproteobacteria
Acinetobacter oleivorans CIP 110421 [AYES]
364771
364696
-
Gly
TCC
[ENA]
¡û
>WENV181836584
OGVJ01012969
[OGVJ] freshwater metagenome; freshwater
447
372
-
Gly
TCC
[ENA]
¢þ
>WENV170022821
BCQK01054993
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
289
364
+
Gly
TCC
[ENA]
¢þ
>WENV170738378
LULP01000080
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
52641
52566
-
Gly
TCC
[ENA]
¢þ
>WENV170741337
LULS01023508
[LULS] marine metagenome; Red Sea water column Station 108 - depth 200m
114
189
+
Gly
TCC
[ENA]
¢þ
>WENV170761032
LUMU01004965
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
114
189
+
Gly
TCC
[ENA]
¢þ
>WENV170761315
LUMV01000015
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
52614
52539
-
Gly
TCC
[ENA]
¢þ
>WENV170762662
LUMW01022630
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
114
189
+
Gly
TCC
[ENA]
¢þ
>W141484137
JFYL01000099
Gammaproteobacteria
Acinetobacter sp. Ver3 [JFYL]
7547
7622
+
Gly
TCC
[ENA]
¡û
>C191087134
CP032279
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 [CP032279]
2189742
2189817
+
Gly
TCC
-
¡û
>C191147367
CP035934
Gammaproteobacteria
Acinetobacter cumulans WCHAc060092 [CP035934]
1157332
1157407
+
Gly
TCC
-
¡û
>C191226305
LS999521
Gammaproteobacteria
Acinetobacter calcoaceticus [LS999521]
3630481
3630406
-
Gly
TCC
-
¡û
>W1910655534
LZYM01002271
Gammaproteobacteria
Acinetobacter sp. JS678 [LZYM]
352
277
-
Gly
TCC
[ENA]
¡û
>W1911587376
PJRJ01000012
Gammaproteobacteria
Acinetobacter sp. B51(2017) [PJRJ]
500
425
-
Gly
TCC
[ENA]
¡û
>W1810225624
POVU01000007
Gammaproteobacteria
Acinetobacter sp. MB5 [POVU]
194688
194763
+
Gly
TCC
[ENA]
¡û
>W1810403131
PYIW01000002
Gammaproteobacteria
Acinetobacter cumulans WCHAc060092 [PYIW]
218149
218224
+
Gly
TCC
[ENA]
¡û
>W1810424252
PYUJ01000007
Gammaproteobacteria
Serratia sp. S1B [PYUJ]
251763
251838
+
Gly
TCC
[ENA]
¡û
>W1810487394
QAYN01000023
Gammaproteobacteria
Acinetobacter oleivorans KCJK7897 [QAYN]
449
374
-
Gly
TCC
[ENA]
¡û
>W1810893972
QUWR01000002
Gammaproteobacteria
Acinetobacter sp. SWAC5 [QUWR]
237769
237844
+
Gly
TCC
[ENA]
¡û
>W1810898024
QUZJ01000012
Gammaproteobacteria
Acinetobacter sp. JW [QUZJ]
557
482
-
Gly
TCC
[ENA]
¡û
>C151096096
CP012608
Gammaproteobacteria
Acinetobacter sp. TTH0-4 [CP012608]
1973963
1974038
+
Gly
TCC
-
¡û
>W10102283
ACPK01000054
Gammaproteobacteria
Acinetobacter calcoaceticus RUH2202 [ACPK]
65981
66056
+
Gly
TCC
[ENA]
¡û
>W1510015393
BBQU01000019
Gammaproteobacteria
Acinetobacter calcoaceticus P23 [BBQU]
93349
93424
+
Gly
TCC
[ENA]
¡û
>W1510016004
BBRX01000072
Gammaproteobacteria
Acinetobacter rudis DSM 24031 [BBRX]
300
225
-
Gly
TCC
[ENA]
¡û
>W1510016838
BBSS01000014
Gammaproteobacteria
Acinetobacter oleivorans KCTC 23045 [BBSS]
322
247
-
Gly
TCC
[ENA]
¡û
>W1510017619
BBTM01000011
Gammaproteobacteria
Acinetobacter calcoaceticus KCTC 2357 [BBTM]
322
247
-
Gly
TCC
[ENA]
¡û
>C10100261
CP002080
Gammaproteobacteria
Acinetobacter oleivorans DR1 [CP002080]
3846145
3846070
-
Gly
TCC
[Ensembl]
¡û
>W11102439
ACPK01000054
Gammaproteobacteria
Acinetobacter calcoaceticus RUH2202 [ACPK]
65981
66056
+
Gly
TCC
[ENA]
¡û
>W1511037959
JHQK01000002
Gammaproteobacteria
Acinetobacter oleivorans PF1 [JHQK]
86617
86692
+
Gly
TCC
[ENA]
¡û
>W1511500966
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
207421
207346
-
Gly
TCC
[ENA]
¡û
>W1511526628
JYGV01000026
Gammaproteobacteria
Acinetobacter calcoaceticus GK1 [JYGV]
89529
89604
+
Gly
TCC
[ENA]
¡û
>W1511542124
JZFB01000008
Gammaproteobacteria
Acinetobacter sp. V2 [JZFB]
361
286
-
Gly
TCC
[ENA]
¡û
>W1511547748
JZRE01000007
Gammaproteobacteria
Acinetobacter brisouii SM1 [JZRE]
279598
279673
+
Gly
TCC
[ENA]
¡û
>C161083265
CP015110
Gammaproteobacteria
Acinetobacter sp. TGL-Y2 [CP015110]
269752
269827
+
Gly
TCC
[Ensembl]
¡û
>W121047031
AIEC01000005
Gammaproteobacteria
Acinetobacter calcoaceticus DSM 30006 = CIP 81.8 [AIEC]
644
569
-
Gly
TCC
[ENA]
¡û
>W1610060980
BCMB01000012
Gammaproteobacteria
Acinetobacter bouvetii [BCMB]
223084
223159
+
Gly
TCC
[ENA]
¡û
>W1610516108
FMBK01000008
Gammaproteobacteria
Acinetobacter albensis [FMBK]
187021
187096
+
Gly
TCC
[ENA]
¡û
>W1610737554
LMOE01000010
Gammaproteobacteria
Acinetobacter sp. Leaf130 [LMOE]
86937
87012
+
Gly
TCC
[ENA]
¡û
>W1610855470
LQMV01000010
Gammaproteobacteria
Acinetobacter calcoaceticus [LQMV]
86342
86417
+
Gly
TCC
[ENA]
¡û
>W1610923354
LSZG01000040
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
197768
197843
+
Gly
TCC
[ENA]
¡û
>W1610923421
LSZH01000015
Gammaproteobacteria
Acinetobacter sp. SFB [LSZH]
221614
221689
+
Gly
TCC
[ENA]
¡û
>W1610927470
LUAW01000006
Gammaproteobacteria
Acinetobacter pragensis ANC 4149 [LUAW]
572
497
-
Gly
TCC
[ENA]
¡û
>W1610937428
LUOQ01000134
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S29_B6 [LUOQ]
52641
52566
-
Gly
TCC
[ENA]
¡û
>W1610937570
LUOV01000025
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 [LUOV]
52614
52539
-
Gly
TCC
[ENA]
¡û
>W1611030042
LZDS01000001
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
78650
78575
-
Gly
TCC
[ENA]
¡û
>W1611065574
MBPQ01002703
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 WCHA34 [MBPQ]
23593
23668
+
Gly
TCC
[ENA]
¡û
>W1710058276
BCMB01000012
Gammaproteobacteria
Acinetobacter bouvetii [BCMB]
223084
223159
+
Gly
TCC
[ENA]
¡û
>W1710501399
FMBK01000008
Gammaproteobacteria
Acinetobacter albensis [FMBK]
187021
187096
+
Gly
TCC
[ENA]
¡û
>W1710511032
FMYK01000002
Gammaproteobacteria
Acinetobacter marinus seohaensis [FMYK]
34350
34425
+
Gly
TCC
[ENA]
¡û
>W1710531282
FNPK01000048
Gammaproteobacteria
Acinetobacter kyonggiensis [FNPK]
417
342
-
Gly
TCC
[ENA]
¡û
>W1710545350
FOBK01000003
Gammaproteobacteria
Acinetobacter sp. DSM 11652 [FOBK]
593
518
-
Gly
TCC
[ENA]
¡û
>W1710548473
FODU01000013
Gammaproteobacteria
Acinetobacter sp. yr461 [FODU]
852
777
-
Gly
TCC
[ENA]
¡û
>W1710576145
FOZU01000016
Gammaproteobacteria
Acinetobacter bohemicus [FOZU]
79774
79849
+
Gly
TCC
[ENA]
¡û
>W1710610436
FZLN01000004
Gammaproteobacteria
Acinetobacter apis [FZLN]
156170
156245
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK