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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455171 (60 seq.)
>W1710912922
LNSA01000005
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
50163
50238
+
Thr
CGT
[ENA]
¡û
>W1710913071
LNSD01000010
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
33852
33927
+
Thr
CGT
[ENA]
¡û
>W1710913119
LNSE01000012
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
33853
33928
+
Thr
CGT
[ENA]
¡û
>W1710913162
LNSF01000010
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
33863
33938
+
Thr
CGT
[ENA]
¡û
>W1710913204
LNSG01000007
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
33887
33962
+
Thr
CGT
[ENA]
¡û
>W1710913260
LNSH01000025
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
33852
33927
+
Thr
CGT
[ENA]
¡û
>W1710913307
LNSI01000022
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
27494
27419
-
Thr
CGT
[ENA]
¡û
>W1710913338
LNSJ01000017
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
63716
63641
-
Thr
CGT
[ENA]
¡û
>W1711127836
LURA01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
5552
5627
+
Thr
CGT
[ENA]
¡û
>W1711127879
LURB01000019
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
1475
1550
+
Thr
CGT
[ENA]
¡û
>W1711127947
LURE01000013
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
34578
34653
+
Thr
CGT
[ENA]
¡û
>W1711128011
LURH01000001
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
233886
233961
+
Thr
CGT
[ENA]
¡û
>W1711128076
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
219832
219757
-
Thr
CGT
[ENA]
¡û
>W1711503964
MKUC01000062
Alphaproteobacteria
Sphingopyxis sp. 65-8 [MKUC]
10440
10365
-
Thr
CGT
[ENA]
¡û
>C171128445
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
852929
852854
-
Thr
CGT
-
¡û
>C019734
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
2238706
2238781
+
Thr
CGT
[Ensembl]
¡û
>WENV181166846
OEIU01003252
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4685
4760
+
Thr
CGT
[ENA]
¢þ
>WENV181308478
OFIS01030246
[OFIS] sludge metagenome; sludge
10
85
+
Thr
CGT
[ENA]
¢þ
>WENV181311998
OFJB01030857
[OFJB] sludge metagenome; sludge
1145
1070
-
Thr
CGT
[ENA]
¢þ
>WENV183729482
PJTQ01049179
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
382
457
+
Thr
CGT
[ENA]
¢þ
>WENV170727550
LULE01000413
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
109
34
-
Thr
CGT
[ENA]
¢þ
>WENV170728968
LULF01003623
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
4415
4490
+
Thr
CGT
[ENA]
¢þ
>WENV170732611
LULJ01000240
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
19772
19697
-
Thr
CGT
[ENA]
¢þ
>WENV170736325
LULM01001063
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
1526
1451
-
Thr
CGT
[ENA]
¢þ
>WENV170737530
LULO01000481
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
19643
19568
-
Thr
CGT
[ENA]
¢þ
>WENV170738365
LULP01000050
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
34578
34653
+
Thr
CGT
[ENA]
¢þ
>WENV170741078
LULS01006623
[LULS] marine metagenome; Red Sea water column Station 108 - depth 200m
247
172
-
Thr
CGT
[ENA]
¢þ
>WENV170742224
LULU01005406
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
640
565
-
Thr
CGT
[ENA]
¢þ
>WENV170742743
LULV01000393
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
1475
1550
+
Thr
CGT
[ENA]
¢þ
>WENV170743581
LULW01000659
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
5552
5627
+
Thr
CGT
[ENA]
¢þ
>WENV170745677
LULY01025326
[LULY] marine metagenome; Red Sea water column Station 91 - depth 200m
291
216
-
Thr
CGT
[ENA]
¢þ
>WENV170759527
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
219832
219757
-
Thr
CGT
[ENA]
¢þ
>WENV170892567
MDTD01039674
[MDTD] marine metagenome; seawater
4278
4353
+
Thr
CGT
[ENA]
¢þ
>W09102950
AAIP01000006
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
122429
122504
+
Thr
CGT
[ENA]
¡û
>C191000595
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
584367
584292
-
Thr
CGT
-
¡û
>W1910549107
FZPA01000002
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
90534
90609
+
Thr
CGT
[ENA]
¡û
>W1910934236
NIWD01000003
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
24563
24638
+
Thr
CGT
[ENA]
¡û
>W1911411573
NWUR01000011
Alphaproteobacteria
Sphingopyxis terrae DSM 24316 [NWUR]
148806
148731
-
Thr
CGT
[ENA]
¡û
>C151051509
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
2813864
2813939
+
Thr
CGT
-
¡û
>C151086226
CP011770
Alphaproteobacteria
Croceicoccus naphthovorans PQ-2 [CP011770]
254776
254701
-
Thr
CGT
[Ensembl]
¡û
>W1511221171
JNFC01000036
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
24826
24751
-
Thr
CGT
[ENA]
¡û
>W1511398038
JTDI01000007
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
154664
154589
-
Thr
CGT
[ENA]
¡û
>C161043659
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
3016676
3016751
+
Thr
CGT
[Ensembl]
¡û
>W1610071245
BCTX01000045
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
38489
38414
-
Thr
CGT
[ENA]
¡û
>W1610771281
LNSA01000005
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
50163
50238
+
Thr
CGT
[ENA]
¡û
>W1610771430
LNSD01000010
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
33852
33927
+
Thr
CGT
[ENA]
¡û
>W1610771478
LNSE01000012
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
33853
33928
+
Thr
CGT
[ENA]
¡û
>W1610771521
LNSF01000010
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
33863
33938
+
Thr
CGT
[ENA]
¡û
>W1610771563
LNSG01000007
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
33887
33962
+
Thr
CGT
[ENA]
¡û
>W1610771619
LNSH01000025
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
33852
33927
+
Thr
CGT
[ENA]
¡û
>W1610771666
LNSI01000022
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
27494
27419
-
Thr
CGT
[ENA]
¡û
>W1610771697
LNSJ01000017
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
63716
63641
-
Thr
CGT
[ENA]
¡û
>W1610938950
LURA01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
5552
5627
+
Thr
CGT
[ENA]
¡û
>W1610938993
LURB01000019
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
1475
1550
+
Thr
CGT
[ENA]
¡û
>W1610939061
LURE01000013
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
34578
34653
+
Thr
CGT
[ENA]
¡û
>W1610939125
LURH01000001
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
233886
233961
+
Thr
CGT
[ENA]
¡û
>W1610939190
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
219832
219757
-
Thr
CGT
[ENA]
¡û
>W1710068610
BCTX01000045
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
38489
38414
-
Thr
CGT
[ENA]
¡û
>W1710602899
FUYP01000022
Alphaproteobacteria
Sphingopyxis flava [FUYP]
7304
7229
-
Thr
CGT
[ENA]
¡û
>W1710609438
FXWL01000002
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
277128
277203
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK