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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455173 (57 seq.)
>W1710892788
LNEC01000022
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
233833
233908
+
Phe
GAA
[ENA]
¡û
>W1710913393
LNSK01000008
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
74034
74109
+
Phe
GAA
[ENA]
¡û
>W131100430
AOUN01000014
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
75008
75083
+
Phe
GAA
[ENA]
¡û
>W1711127841
LURA01000024
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
36133
36208
+
Phe
GAA
[ENA]
¡û
>W1711127872
LURB01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
704
779
+
Phe
GAA
[ENA]
¡û
>W1711127924
LURC01000410
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
2715
2640
-
Phe
GAA
[ENA]
¡û
>W1711127943
LURE01000007
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
141554
141479
-
Phe
GAA
[ENA]
¡û
>W1711127984
LURF01000360
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
1153
1228
+
Phe
GAA
[ENA]
¡û
>W1711127996
LURG01000092
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
918
993
+
Phe
GAA
[ENA]
¡û
>W1711128036
LURH01000022
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
74773
74698
-
Phe
GAA
[ENA]
¡û
>W1711128082
LURI01000011
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
75020
75095
+
Phe
GAA
[ENA]
¡û
>W1711386414
MEFH01000060
Alphaproteobacteria
Sphingopyxis sp. SCN 67-31 [MEFH]
42794
42869
+
Phe
GAA
[ENA]
¡û
>W1711503966
MKUC01000066
Alphaproteobacteria
Sphingopyxis sp. 65-8 [MKUC]
69347
69422
+
Phe
GAA
[ENA]
¡û
>WENV181312080
OFJB01039738
[OFJB] sludge metagenome; sludge
546
471
-
Phe
GAA
[ENA]
¢þ
>WENV181402039
OFTY01000051
[OFTY] sludge metagenome; sludge
107918
107843
-
Phe
GAA
[ENA]
¢þ
>WENV170555406
CXWL01000501
[CXWL] groundwater metagenome; biofilm material
236156
236231
+
Phe
GAA
[ENA]
¢þ
>WENV170555681
CXWL01001730
[CXWL] groundwater metagenome; biofilm material
8728
8803
+
Phe
GAA
[ENA]
¢þ
>WENV170709560
LNFM01000470
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
293538
293613
+
Phe
GAA
[ENA]
¢þ
>WENV170727475
LULE01000152
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
3401
3326
-
Phe
GAA
[ENA]
¢þ
>WENV170728794
LULF01000761
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
69
144
+
Phe
GAA
[ENA]
¢þ
>WENV170729806
LULG01001604
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
918
993
+
Phe
GAA
[ENA]
¢þ
>WENV170732617
LULJ01000278
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
58885
58960
+
Phe
GAA
[ENA]
¢þ
>WENV170734111
LULK01001387
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
1153
1228
+
Phe
GAA
[ENA]
¢þ
>WENV170735857
LULL01017757
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
434
509
+
Phe
GAA
[ENA]
¢þ
>WENV170736305
LULM01000895
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
149
74
-
Phe
GAA
[ENA]
¢þ
>WENV170737488
LULO01000266
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
7301
7226
-
Phe
GAA
[ENA]
¢þ
>WENV170738346
LULP01000019
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
141554
141479
-
Phe
GAA
[ENA]
¢þ
>WENV170742061
LULU01000414
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
2715
2640
-
Phe
GAA
[ENA]
¢þ
>WENV170742870
LULV01001879
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
704
779
+
Phe
GAA
[ENA]
¢þ
>WENV170743457
LULW01000114
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
36133
36208
+
Phe
GAA
[ENA]
¢þ
>WENV170759586
LUMT01000020
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
75020
75095
+
Phe
GAA
[ENA]
¢þ
>C181133054
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
1158253
1158328
+
Phe
GAA
-
¡û
>W141819166
JQMC01000005
Alphaproteobacteria
Rhizorhabdus wittichii [JQMC]
29463
29538
+
Phe
GAA
[ENA]
¡û
>W1910501790
FYAT01000018
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
39111
39186
+
Phe
GAA
[ENA]
¡û
>W1910549112
FZPA01000002
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
123963
123888
-
Phe
GAA
[ENA]
¡û
>W1911411563
NWUR01000003
Alphaproteobacteria
Sphingopyxis terrae DSM 24316 [NWUR]
7603
7528
-
Phe
GAA
[ENA]
¡û
>C151051491
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
1293994
1294069
+
Phe
GAA
-
¡û
>C151086221
CP011770
Alphaproteobacteria
Croceicoccus naphthovorans PQ-2 [CP011770]
633857
633782
-
Phe
GAA
[Ensembl]
¡û
>W1511398020
JTDI01000003
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
773763
773838
+
Phe
GAA
[ENA]
¡û
>C161040511
CP012199
Alphaproteobacteria
Sphingopyxis granuli TFA [CP012199]
2941673
2941598
-
Phe
GAA
[Ensembl]
¡û
>C161055604
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
2507879
2507954
+
Phe
GAA
[Ensembl]
¡û
>C161105250
HG966617
Alphaproteobacteria
Candidatus Phaeomarinobacter ectocarpi Ec32 [HG966617]
467363
467438
+
Phe
GAA
[Ensembl]
¡û
>W1610071358
BCUA01000008
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
75272
75197
-
Phe
GAA
[ENA]
¡û
>W1610077673
BCZQ01000006
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
137863
137788
-
Phe
GAA
[ENA]
¡û
>W1610753054
LNEC01000022
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
233833
233908
+
Phe
GAA
[ENA]
¡û
>W1610771752
LNSK01000008
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
74034
74109
+
Phe
GAA
[ENA]
¡û
>W1610938955
LURA01000024
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
36133
36208
+
Phe
GAA
[ENA]
¡û
>W1610938986
LURB01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
704
779
+
Phe
GAA
[ENA]
¡û
>W1610939038
LURC01000410
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
2715
2640
-
Phe
GAA
[ENA]
¡û
>W1610939057
LURE01000007
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
141554
141479
-
Phe
GAA
[ENA]
¡û
>W1610939098
LURF01000360
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
1153
1228
+
Phe
GAA
[ENA]
¡û
>W1610939110
LURG01000092
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
918
993
+
Phe
GAA
[ENA]
¡û
>W1610939150
LURH01000022
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
74773
74698
-
Phe
GAA
[ENA]
¡û
>W1610939196
LURI01000011
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
75020
75095
+
Phe
GAA
[ENA]
¡û
>W1710068723
BCUA01000008
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
75272
75197
-
Phe
GAA
[ENA]
¡û
>W1710075311
BCZQ01000006
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
137863
137788
-
Phe
GAA
[ENA]
¡û
>W1710609426
FXWL01000001
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
781033
780958
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK