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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455235 (23 seq.)
>W1711138254
LVCQ01000019
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
10507
10582
+
Asn
GTT
[ENA]
¡û
>W1711372793
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
1375741
1375816
+
Asn
GTT
[ENA]
¡û
>W1711798548
MWVI01000046
Gammaproteobacteria
Halomonas lionensis [MWVI]
20013
20088
+
Asn
GTT
[ENA]
¡û
>C171026773
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
2426648
2426573
-
Asn
GTT
-
¡û
>C171026829
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
2427266
2427191
-
Asn
GTT
-
¡û
>C171026882
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
3082129
3082054
-
Asn
GTT
-
¡û
>C171026916
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
300020
300095
+
Asn
GTT
-
¡û
>C171027023
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
447950
447875
-
Asn
GTT
-
¡û
>C171027053
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
2426741
2426666
-
Asn
GTT
-
¡û
>C171027106
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
3082135
3082060
-
Asn
GTT
-
¡û
>C171027162
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
3082134
3082059
-
Asn
GTT
-
¡û
>C171027247
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
448100
448025
-
Asn
GTT
-
¡û
>W131038491
AMGC01000435
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
5900
5825
-
Asn
GTT
[ENA]
¡û
>WENV180099774
NSIT01000111
[NSIT] invertebrate metagenome; Endozoicomonas-like sequences binned from scallop gill tissue
3721
3796
+
Asn
GTT
[ENA]
¢þ
>W141221220
AZYQ02000183
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
30324
30399
+
Asn
GTT
[ENA]
¡û
>W1911652720
QBEV01000013
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
10799
10874
+
Asn
GTT
[ENA]
¡û
>C151087002
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
886742
886667
-
Asn
GTT
[Ensembl]
¡û
>C151095333
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
447949
447874
-
Asn
GTT
-
¡û
>W1511336304
JRAD02000026
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
30325
30400
+
Asn
GTT
[ENA]
¡û
>W1511657166
LELB01000152
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
30279
30354
+
Asn
GTT
[ENA]
¡û
>C161062508
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
448116
448041
-
Asn
GTT
-
¡û
>C161063175
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
448219
448144
-
Asn
GTT
-
¡û
>W1610949340
LVCQ01000019
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
10507
10582
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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