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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455259 (47 seq.)
>WENV180207579
OBAI01012387
[OBAI] human gut metagenome; human gut
270
196
-
Glu
TTC
[ENA]
¢þ
>WENV180211939
OBAM01049589
[OBAM] human gut metagenome; human gut
258
184
-
Glu
TTC
[ENA]
¢þ
>WENV180771749
ODIH01008954
[ODIH] human metagenome; G_DNA_Stool
3737
3811
+
Glu
TTC
[ENA]
¢þ
>WENV180994282
ODVQ01055776
[ODVQ] human metagenome; G_DNA_Stool
249
175
-
Glu
TTC
[ENA]
¢þ
>WENV181054080
ODYI01001675
[ODYI] human metagenome; G_DNA_Stool
18089
18015
-
Glu
TTC
[ENA]
¢þ
>WENV181099573
OECI01004753
[OECI] human metagenome; G_DNA_Stool
4304
4378
+
Glu
TTC
[ENA]
¢þ
>WENV181134272
OEGF01050343
[OEGF] human metagenome; G_DNA_Stool
243
169
-
Glu
TTC
[ENA]
¢þ
>WENV181186362
OEMZ01000333
[OEMZ] gut metagenome; human stools
3665
3739
+
Glu
TTC
[ENA]
¢þ
>WENV181451639
OGDY01010165
[OGDY] metagenome; Human gut stool
296
222
-
Glu
TTC
[ENA]
¢þ
>WENV181593107
OGKS01002468
[OGKS] metagenome; Human gut stool
3717
3791
+
Glu
TTC
[ENA]
¢þ
>WENV181607918
OGLM01035940
[OGLM] metagenome; Human gut stool
232
158
-
Glu
TTC
[ENA]
¢þ
>WENV181638726
OGNC01010045
[OGNC] metagenome; Human gut stool
175
101
-
Glu
TTC
[ENA]
¢þ
>WENV181684560
OGOV01013253
[OGOV] human gut metagenome; faeces
175
101
-
Glu
TTC
[ENA]
¢þ
>WENV181688635
OGOX01107354
[OGOX] human gut metagenome; faeces
219
145
-
Glu
TTC
[ENA]
¢þ
>WENV181885564
OGXJ01033126
[OGXJ] human gut metagenome; faeces
334
260
-
Glu
TTC
[ENA]
¢þ
>WENV181995694
OHAT01006870
[OHAT] human gut metagenome; faeces
5126
5200
+
Glu
TTC
[ENA]
¢þ
>WENV182008830
OHBJ01004053
[OHBJ] human gut metagenome; faeces
3287
3361
+
Glu
TTC
[ENA]
¢þ
>WENV182097328
OHHO01022126
[OHHO] human gut metagenome; feces
296
222
-
Glu
TTC
[ENA]
¢þ
>WENV182537658
OIXH01012881
[OIXH] human gut metagenome; faeces
4167
4241
+
Glu
TTC
[ENA]
¢þ
>WENV182626802
OJKP01026020
[OJKP] metagenome; faeces
1181
1107
-
Glu
TTC
[ENA]
¢þ
>WENV182634008
OJKY01003914
[OJKY] metagenome; faeces
4804
4878
+
Glu
TTC
[ENA]
¢þ
>WENV182681207
OJNV01000211
[OJNV] human gut metagenome; human gut
38248
38322
+
Glu
TTC
[ENA]
¢þ
>WENV182694256
OJOI01000247
[OJOI] human gut metagenome; human gut
38439
38513
+
Glu
TTC
[ENA]
¢þ
>WENV182965232
OKWR01043170
[OKWR] human gut metagenome; human gut
313
387
+
Glu
TTC
[ENA]
¢þ
>WENV183037164
OLGA01009695
[OLGA] human gut metagenome; faeces
3884
3958
+
Glu
TTC
[ENA]
¢þ
>WENV183045435
OLGE01011097
[OLGE] human gut metagenome; faeces
4204
4278
+
Glu
TTC
[ENA]
¢þ
>WENV183082850
OLJB01005647
[OLJB] human gut metagenome; human gut
3943
4017
+
Glu
TTC
[ENA]
¢þ
>WENV183130968
OLOA01009263
[OLOA] human gut metagenome; faeces
5086
5160
+
Glu
TTC
[ENA]
¢þ
>WENV183152090
OLOQ01002126
[OLOQ] human gut metagenome; faeces
15020
15094
+
Glu
TTC
[ENA]
¢þ
>WENV183156420
OLOS01008889
[OLOS] human gut metagenome; faeces
246
172
-
Glu
TTC
[ENA]
¢þ
>WENV183212764
OLQD01007823
[OLQD] human gut metagenome; faeces
3826
3752
-
Glu
TTC
[ENA]
¢þ
>WENV183280172
OLSB01002417
[OLSB] human gut metagenome; faeces
295
221
-
Glu
TTC
[ENA]
¢þ
>WENV183339982
OLWL01001529
[OLWL] human gut metagenome; feces
6496
6422
-
Glu
TTC
[ENA]
¢þ
>WENV183369338
OLXS01014396
[OLXS] human gut metagenome; feces
259
185
-
Glu
TTC
[ENA]
¢þ
>WENV183462760
OMDX01000479
[OMDX] human gut metagenome; feces
4844
4918
+
Glu
TTC
[ENA]
¢þ
>WENV170048032
CDYZ01066970
[CDYZ] gut metagenome; human stools
347
273
-
Glu
TTC
[ENA]
¢þ
>WENV170059041
CDZH01031503
[CDZH] gut metagenome; human stools
64824
64898
+
Glu
TTC
[ENA]
¢þ
>WENV170060412
CDZI01003390
[CDZI] gut metagenome; human stools
6803
6729
-
Glu
TTC
[ENA]
¢þ
>WENV170086525
CEAC01010958
[CEAC] gut metagenome; human stools
4008
4082
+
Glu
TTC
[ENA]
¢þ
>WENV170108381
CECA01026992
[CECA] gut metagenome; human stools
259
185
-
Glu
TTC
[ENA]
¢þ
>C181115598
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
305757
305683
-
Glu
TTC
-
¡û
>C191031601
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
305753
305679
-
Glu
TTC
-
¡û
>C191031656
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
305753
305679
-
Glu
TTC
-
¡û
>C191072267
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
305757
305683
-
Glu
TTC
-
¡û
>W10115270
ADJQ01000001
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
126610
126536
-
Glu
TTC
[ENA]
¡û
>C11108794
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
305744
305670
-
Glu
TTC
[Ensembl]
¡û
>W11118856
ADJQ01000001
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
126610
126536
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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