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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455280 (59 seq.)
>W1711128688
LUTM01000010
Gammaproteobacteria
Lonsdalea populi subsp. populi [LUTM]
94100
94026
-
Gln
TTG
[ENA]
¡û
>W1711128740
LUTN01000003
Gammaproteobacteria
Lonsdalea britannica subsp. britannica [LUTN]
121861
121787
-
Gln
TTG
[ENA]
¡û
>W1711128838
LUTO01000099
Gammaproteobacteria
Lonsdalea britannica subsp. britannica [LUTO]
3856
3930
+
Gln
TTG
[ENA]
¡û
>W1711624502
MPHJ01000026
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
1215
1141
-
Gln
TTG
[ENA]
¡û
>W1711765987
MUXZ01000016
Gammaproteobacteria
Canicola haemoglobinophilus [MUXZ]
37307
37381
+
Gln
TTG
[ENA]
¡û
>W1712109983
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
2287968
2287894
-
Gln
TTG
[ENA]
¡û
>W1712109984
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
2287853
2287779
-
Gln
TTG
[ENA]
¡û
>C171033386
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4945200
4945126
-
Gln
TTG
-
¡û
>C171033389
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4944762
4944688
-
Gln
TTG
-
¡û
>W141350049
JCKH01000009
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
317345
317271
-
Gln
TTG
[ENA]
¡û
>W141350050
JCKH01000009
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
317230
317156
-
Gln
TTG
[ENA]
¡û
>WENV170121552
CENM01039753
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4770
4696
-
Gln
TTG
[ENA]
¢þ
>WENV170136816
CENV01079267
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4388
4314
-
Gln
TTG
[ENA]
¢þ
>WENV170260387
CEQZ01018192
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
13397
13323
-
Gln
TTG
[ENA]
¢þ
>C181002185
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
1202528
1202454
-
Gln
TTG
-
¡û
>C181002186
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
1202413
1202339
-
Gln
TTG
-
¡û
>C181055103
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
1229572
1229498
-
Gln
TTG
-
¡û
>C181055104
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
1229457
1229383
-
Gln
TTG
-
¡û
>C191173248
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1224135
1224061
-
Gln
TTG
-
¡û
>C191185837
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
907908
907982
+
Gln
TTG
-
¡û
>W141710495
JMPK01000038
Gammaproteobacteria
Hafnia alvei ATCC 13337 [JMPK]
312
238
-
Gln
TTG
[ENA]
¡û
>W141710496
JMPK01000038
Gammaproteobacteria
Hafnia alvei ATCC 13337 [JMPK]
197
123
-
Gln
TTG
[ENA]
¡û
>W1910211929
FMIQ01000031
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
15175
15101
-
Gln
TTG
[ENA]
¡û
>W1910211930
FMIQ01000031
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
15060
14986
-
Gln
TTG
[ENA]
¡û
>W1910643453
LUSP01000008
Gammaproteobacteria
Lonsdalea quercina CFCC 11059 [LUSP]
17802
17876
+
Gln
TTG
[ENA]
¡û
>W1910643645
LUSS01000101
Gammaproteobacteria
Lonsdalea populi CFCC 12252 [LUSS]
11901
11975
+
Gln
TTG
[ENA]
¡û
>W1910643730
LUSU01000003
Gammaproteobacteria
Lonsdalea populi CFCC 13097 [LUSU]
93562
93488
-
Gln
TTG
[ENA]
¡û
>W1910643814
LUSV01000070
Gammaproteobacteria
Lonsdalea populi CFCC 11200 [LUSV]
1849
1775
-
Gln
TTG
[ENA]
¡û
>W1910643850
LUSW01000009
Gammaproteobacteria
Lonsdalea populi CFCC 12721 [LUSW]
94000
93926
-
Gln
TTG
[ENA]
¡û
>W1910643908
LUSX01000007
Gammaproteobacteria
Lonsdalea populi CFCC 11265 [LUSX]
49268
49342
+
Gln
TTG
[ENA]
¡û
>W1910644145
LUTB01000023
Gammaproteobacteria
Lonsdalea populi CFCC 12509 [LUTB]
49101
49175
+
Gln
TTG
[ENA]
¡û
>W1910644297
LUTF01000011
Gammaproteobacteria
Lonsdalea populi CFCC 11199 [LUTF]
56750
56824
+
Gln
TTG
[ENA]
¡û
>W1910644411
LUTH01000019
Gammaproteobacteria
Lonsdalea populi CFCC 13800 [LUTH]
49180
49254
+
Gln
TTG
[ENA]
¡û
>W1910644595
LUTK01000033
Gammaproteobacteria
Lonsdalea populi CFCC 13126 [LUTK]
22172
22098
-
Gln
TTG
[ENA]
¡û
>W1911179147
NQMS01000001
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
271425
271351
-
Gln
TTG
[ENA]
¡û
>W1911179148
NQMS01000001
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
271300
271226
-
Gln
TTG
[ENA]
¡û
>W1911551671
OXJV01000016
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
370187
370113
-
Gln
TTG
[ENA]
¡û
>W1810157863
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4225417
4225491
+
Gln
TTG
[ENA]
¡û
>W1810758401
QPIR01000134
Gammaproteobacteria
Hafnia paralvei C2 [QPIR]
201
127
-
Gln
TTG
[ENA]
¡û
>W1810758402
QPIR01000134
Gammaproteobacteria
Hafnia paralvei C2 [QPIR]
76
2
-
Gln
TTG
[ENA]
¡û
>W1810758468
QPIS01000136
Gammaproteobacteria
Hafnia paralvei C3 [QPIS]
65612
65686
+
Gln
TTG
[ENA]
¡û
>W1810758525
QPIT01000096
Gammaproteobacteria
Hafnia paralvei C5 [QPIT]
207
133
-
Gln
TTG
[ENA]
¡û
>W1810758526
QPIT01000096
Gammaproteobacteria
Hafnia paralvei C5 [QPIT]
82
8
-
Gln
TTG
[ENA]
¡û
>W1810758587
QPIU01000096
Gammaproteobacteria
Hafnia paralvei C8 [QPIU]
65604
65678
+
Gln
TTG
[ENA]
¡û
>W1810758644
QPIV01000095
Gammaproteobacteria
Hafnia paralvei C9 [QPIV]
406
332
-
Gln
TTG
[ENA]
¡û
>W1810758645
QPIV01000095
Gammaproteobacteria
Hafnia paralvei C9 [QPIV]
281
207
-
Gln
TTG
[ENA]
¡û
>C151057796
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
1432965
1432891
-
Gln
TTG
[Ensembl]
¡û
>C151057797
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
1432850
1432776
-
Gln
TTG
[Ensembl]
¡û
>W11113858
ADCU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium 9_2_54FAA [ADCU]
376822
376748
-
Gln
TTG
[ENA]
¡û
>W11113859
ADCU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium 9_2_54FAA [ADCU]
376697
376623
-
Gln
TTG
[ENA]
¡û
>W1511399544
JTET01000015
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
62843
62769
-
Gln
TTG
[ENA]
¡û
>W1511399545
JTET01000015
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
62728
62654
-
Gln
TTG
[ENA]
¡û
>W1511586428
LAZG01000011
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
66061
66135
+
Gln
TTG
[ENA]
¡û
>W1511586429
LAZG01000011
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
66176
66250
+
Gln
TTG
[ENA]
¡û
>C161086826
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
316231
316305
+
Gln
TTG
-
¡û
>C161086827
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
316346
316420
+
Gln
TTG
-
¡û
>W121066964
AJSX01000030
Gammaproteobacteria
Pasteurella bettyae CCUG 2042 [AJSX]
143729
143803
+
Gln
TTG
[ENA]
¡û
>W121066965
AJSX01000030
Gammaproteobacteria
Pasteurella bettyae CCUG 2042 [AJSX]
143848
143922
+
Gln
TTG
[ENA]
¡û
>W1710566896
FOSH01000018
Gammaproteobacteria
Methylophaga sulfidovorans [FOSH]
22798
22872
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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