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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455308 (37 seq.)
>W1711174845
LWEK01000167
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
247
322
+
Glu
TTC
[ENA]
¡û
>W1711174870
LWEK01001113
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
7239
7314
+
Glu
TTC
[ENA]
¡û
>W1711174922
LWEK01001985
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
73939
73864
-
Glu
TTC
[ENA]
¡û
>W1711174935
LWEK01002253
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
329
404
+
Glu
TTC
[ENA]
¡û
>W1711176301
LWFH01000302
Gammaproteobacteria
Oleiphilus sp. HI0066 [LWFH]
250
175
-
Glu
TTC
[ENA]
¡û
>W1711176326
LWFH01001200
Gammaproteobacteria
Oleiphilus sp. HI0066 [LWFH]
43928
43853
-
Glu
TTC
[ENA]
¡û
>W1711176383
LWFI01000911
Gammaproteobacteria
Oleiphilus sp. HI0067 [LWFI]
36754
36679
-
Glu
TTC
[ENA]
¡û
>W1711176404
LWFI01001443
Gammaproteobacteria
Oleiphilus sp. HI0067 [LWFI]
23795
23720
-
Glu
TTC
[ENA]
¡û
>W1711177755
LWGF01000625
Gammaproteobacteria
Oleiphilus sp. HI0125 [LWGF]
14907
14832
-
Glu
TTC
[ENA]
¡û
>W1711177761
LWGF01000879
Gammaproteobacteria
Oleiphilus sp. HI0125 [LWGF]
31242
31317
+
Glu
TTC
[ENA]
¡û
>W131034272
AJRO01000003
Gammaproteobacteria
Vibrio cholerae HC-1A2 [AJRO]
94354
94429
+
Glu
TTC
[ENA]
¡û
>W131169967
ARFE01000002
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
1216177
1216252
+
Glu
TTC
[ENA]
¡û
>W131169968
ARFE01000002
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
1216645
1216720
+
Glu
TTC
[ENA]
¡û
>C171016805
CP012418
Gammaproteobacteria
Kangiella sediminilitoris KCTC 23892 [CP012418]
995365
995440
+
Glu
TTC
-
¡û
>C171016806
CP012418
Gammaproteobacteria
Kangiella sediminilitoris KCTC 23892 [CP012418]
996306
996381
+
Glu
TTC
-
¡û
>WENV180346584
OBLN01171087
[OBLN] sediment metagenome; sediment
326
251
-
Glu
TTC
[ENA]
¢þ
>WENV170274485
CERM01019994
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
454
529
+
Glu
TTC
[ENA]
¢þ
>C181036484
CP019121
Gammaproteobacteria
Vibrio vulnificus FORC_054 [CP019121, CP019122]
3129467
3129392
-
Glu
TTC
-
¡û
>C181113461
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
1574134
1574059
-
Glu
TTC
-
¡û
>C181113462
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
1573343
1573268
-
Glu
TTC
-
¡û
>C191188582
CP041202
Gammaproteobacteria
Vibrio parahaemolyticus Vb0624 [CP041201, CP041202]
598426
598501
+
Glu
TTC
-
¡û
>W09109214
ABUB01000003
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
423632
423707
+
Glu
TTC
[ENA]
¡û
>W09109215
ABUB01000003
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
424272
424347
+
Glu
TTC
[ENA]
¡û
>W1910683936
MCXQ01000029
Gammaproteobacteria
Vibrio lentus 10N.261.52.F1 [MCXQ]
32
106
+
Glu
TTC
[ENA]
¡û
>C10108023
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
1673870
1673795
-
Glu
TTC
[Ensembl]
¡û
>C10108024
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
1673230
1673155
-
Glu
TTC
[Ensembl]
¡û
>W11175352
AFWF01000247
Gammaproteobacteria
Vibrio ichthyoenteri ATCC 700023 [AFWF]
310
235
-
Glu
TTC
[ENA]
¡û
>W1610983158
LWEK01000167
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
247
322
+
Glu
TTC
[ENA]
¡û
>W1610983183
LWEK01001113
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
7239
7314
+
Glu
TTC
[ENA]
¡û
>W1610983235
LWEK01001985
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
73939
73864
-
Glu
TTC
[ENA]
¡û
>W1610983248
LWEK01002253
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
329
404
+
Glu
TTC
[ENA]
¡û
>W1610984614
LWFH01000302
Gammaproteobacteria
Oleiphilus sp. HI0066 [LWFH]
250
175
-
Glu
TTC
[ENA]
¡û
>W1610984639
LWFH01001200
Gammaproteobacteria
Oleiphilus sp. HI0066 [LWFH]
43928
43853
-
Glu
TTC
[ENA]
¡û
>W1610984696
LWFI01000911
Gammaproteobacteria
Oleiphilus sp. HI0067 [LWFI]
36754
36679
-
Glu
TTC
[ENA]
¡û
>W1610984717
LWFI01001443
Gammaproteobacteria
Oleiphilus sp. HI0067 [LWFI]
23795
23720
-
Glu
TTC
[ENA]
¡û
>W1610986068
LWGF01000625
Gammaproteobacteria
Oleiphilus sp. HI0125 [LWGF]
14907
14832
-
Glu
TTC
[ENA]
¡û
>W1610986074
LWGF01000879
Gammaproteobacteria
Oleiphilus sp. HI0125 [LWGF]
31242
31317
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK