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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455330 (57 seq.)
>W1710887806
LMZF01000016
Alphaproteobacteria
Rhizobium leucaenae [LMZF]
16462
16387
-
Trp
CCA
[ENA]
¡û
>W1711213604
LXKM01000001
Alphaproteobacteria
Agrobacterium sp. 13-626 [LXKM]
1100336
1100261
-
Trp
CCA
[ENA]
¡û
>W1711213645
LXKN01000001
Alphaproteobacteria
Rhizobium sp. AC27/96 [LXKN]
690632
690707
+
Trp
CCA
[ENA]
¡û
>W1711213739
LXKP01000001
Alphaproteobacteria
Agrobacterium sp. B131/95 [LXKP]
503127
503202
+
Trp
CCA
[ENA]
¡û
>W1711213793
LXKQ01000001
Alphaproteobacteria
Agrobacterium sp. B133/95 [LXKQ]
745635
745560
-
Trp
CCA
[ENA]
¡û
>W1711283508
LZPI01000031
Alphaproteobacteria
Rhizobium sp. YK2 [LZPI]
4306
4381
+
Trp
CCA
[ENA]
¡û
>W1711506034
MKWB01000011
Alphaproteobacteria
Rhizobium sp. 60-20 [MKWB]
16583
16508
-
Trp
CCA
[ENA]
¡û
>W1711636808
MPVZ01000039
Alphaproteobacteria
Rhizobium sp. P44RR-XXIV [MPVZ]
3851
3926
+
Trp
CCA
[ENA]
¡û
>W1711694771
MSIG01000030
Alphaproteobacteria
Mongoliimonas terrestris MIMtkB18 [MSIG]
396
471
+
Trp
CCA
[ENA]
¡û
>W131220078
ATZB01000054
Alphaproteobacteria
Rhizobium sullae WSM1592 [ATZB]
1757
1832
+
Trp
CCA
[ENA]
¡û
>W131227343
AUFB01000052
Alphaproteobacteria
Rhizobium leucaenae USDA 9039 [AUFB]
3880
3955
+
Trp
CCA
[ENA]
¡û
>W141065161
AQHN01000082
Alphaproteobacteria
Rhizobium freirei PRF 81 [AQHN]
16512
16437
-
Trp
CCA
[ENA]
¡û
>W141236081
BAYX01000002
Alphaproteobacteria
Rhizobium rhizogenes NBRC 13257 [BAYX]
493139
493214
+
Trp
CCA
[ENA]
¡û
>W141277029
JAEG01000024
Alphaproteobacteria
Ciceribacter selenitireducens ATCC BAA-1503 [JAEG]
948
1023
+
Trp
CCA
[ENA]
¡û
>WENV170668124
LADL02001240
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
15650
15575
-
Trp
CCA
[ENA]
¢þ
>W141485676
JFZP01000013
Alphaproteobacteria
Rhizobium rhizogenes [JFZP]
1565443
1565368
-
Trp
CCA
[ENA]
¡û
>C181074743
CP022998
Alphaproteobacteria
Rhizobium sp. 11515TR [CP022998]
2195939
2196014
+
Trp
CCA
-
¡û
>C181099251
CP024311
Alphaproteobacteria
Rhizobium sp. NXC24 [CP024311]
1570967
1571042
+
Trp
CCA
-
¡û
>C191093650
CP032684
Alphaproteobacteria
Rhizobium sp. CCGE531 [CP032684]
1592279
1592354
+
Trp
CCA
-
¡û
>C191093701
CP032689
Alphaproteobacteria
Rhizobium sp. CCGE532 [CP032689]
1594409
1594484
+
Trp
CCA
-
¡û
>C191093752
CP032694
Alphaproteobacteria
Rhizobium jaguaris CCGE525 [CP032694]
1761727
1761802
+
Trp
CCA
-
¡û
>W141816481
JQJW01000032
Alphaproteobacteria
Rhizobium rhizogenes [JQJW]
16594
16519
-
Trp
CCA
[ENA]
¡û
>W141816529
JQJX01000031
Alphaproteobacteria
Rhizobium rhizogenes [JQJX]
16595
16520
-
Trp
CCA
[ENA]
¡û
>W141817788
JQLA01000050
Alphaproteobacteria
Rhizobium sp. OK494 [JQLA]
16958
16883
-
Trp
CCA
[ENA]
¡û
>W141817819
JQLB01000004
Alphaproteobacteria
Rhizobium sp. YR060 [JQLB]
224077
224002
-
Trp
CCA
[ENA]
¡û
>W1910441855
FWER01000079
Alphaproteobacteria
Rhizobium sullae [FWER]
17709
17634
-
Trp
CCA
[ENA]
¡û
>C09100682
CP000628
Alphaproteobacteria
Rhizobium rhizogenes K84 [CP000628, CP000629]
1553862
1553937
+
Trp
CCA
[Ensembl]
¡û
>W1911551859
PCDQ01000061
Alphaproteobacteria
Rhizobium tumorigenes 1078 [PCDQ]
561673
561748
+
Trp
CCA
[ENA]
¡û
>W1911655893
QERI01000006
Alphaproteobacteria
Rhizobium sp. SEMIA 4088 [QERI]
58195
58270
+
Trp
CCA
[ENA]
¡û
>W1810147411
PIQN01000043
Alphaproteobacteria
Rhizobium sullae HCNT1 [PIQN]
17178
17103
-
Trp
CCA
[ENA]
¡û
>W1810195939
PKSP01000010
Alphaproteobacteria
Rhizobium sp. KAs_5_22 [PKSP]
2323567
2323492
-
Trp
CCA
[ENA]
¡û
>W1810403652
PYJN01000013
Alphaproteobacteria
Rhizobium sp. SEMIA4064 [PYJN]
312713
312788
+
Trp
CCA
[ENA]
¡û
>W1810403817
PYJQ01000005
Alphaproteobacteria
Rhizobium sp. JAB6 [PYJQ]
490026
490101
+
Trp
CCA
[ENA]
¡û
>W1810696355
QLTG01000009
Alphaproteobacteria
Rhizobium sp. NFR17 [QLTG]
106402
106327
-
Trp
CCA
[ENA]
¡û
>W1810706794
QMKK01000029
Alphaproteobacteria
Rhizobium tropici IGFRI Rhizo-19 [QMKK]
5026
5101
+
Trp
CCA
[ENA]
¡û
>W1511432714
JUGS01000008
Alphaproteobacteria
Rhizobium rhizogenes CF262 [JUGS]
1200376
1200451
+
Trp
CCA
[ENA]
¡û
>W1511433457
JUHF01000008
Alphaproteobacteria
Rhizobium rhizogenes CF263 [JUHF]
1668627
1668552
-
Trp
CCA
[ENA]
¡û
>W1511433478
JUHG01000007
Alphaproteobacteria
Rhizobium rhizogenes OV677 [JUHG]
4311
4386
+
Trp
CCA
[ENA]
¡û
>W1511433613
JUHI01000048
Alphaproteobacteria
Rhizobium tropici PTD1 [JUHI]
16761
16686
-
Trp
CCA
[ENA]
¡û
>W1511433930
JUHP01000001
Alphaproteobacteria
Rhizobium rhizogenes YR530 [JUHP]
4071
4146
+
Trp
CCA
[ENA]
¡û
>W1511434017
JUHQ01000045
Alphaproteobacteria
Rhizobium tropici YR635 [JUHQ]
16595
16520
-
Trp
CCA
[ENA]
¡û
>W1511434157
JUHT01000042
Alphaproteobacteria
Rhizobium lusitanum YR374 [JUHT]
3816
3891
+
Trp
CCA
[ENA]
¡û
>W121069018
AJVM01000082
Alphaproteobacteria
Rhizobium sp. AP16 [AJVM]
3785
3860
+
Trp
CCA
[ENA]
¡û
>C131011495
CP004015
Alphaproteobacteria
Rhizobium tropici CIAT 899 [CP004015]
1503063
1503138
+
Trp
CCA
[Ensembl]
¡û
>W1610514348
FMAC01000028
Alphaproteobacteria
Rhizobium hainanense [FMAC]
3920
3995
+
Trp
CCA
[ENA]
¡û
>W1610514495
FMAF01000054
Alphaproteobacteria
Rhizobium lusitanum [FMAF]
17126
17051
-
Trp
CCA
[ENA]
¡û
>W1610514542
FMAG01000018
Alphaproteobacteria
Rhizobium multihospitium [FMAG]
16937
16862
-
Trp
CCA
[ENA]
¡û
>W1610514589
FMAH01000072
Alphaproteobacteria
Rhizobium miluonense [FMAH]
17242
17167
-
Trp
CCA
[ENA]
¡û
>W1610748506
LMZF01000016
Alphaproteobacteria
Rhizobium leucaenae [LMZF]
16462
16387
-
Trp
CCA
[ENA]
¡û
>W1611000608
LXKM01000001
Alphaproteobacteria
Agrobacterium sp. 13-626 [LXKM]
1100336
1100261
-
Trp
CCA
[ENA]
¡û
>W1611000649
LXKN01000001
Alphaproteobacteria
Rhizobium sp. AC27/96 [LXKN]
690632
690707
+
Trp
CCA
[ENA]
¡û
>W1611000743
LXKP01000001
Alphaproteobacteria
Agrobacterium sp. B131/95 [LXKP]
503127
503202
+
Trp
CCA
[ENA]
¡û
>W1611000797
LXKQ01000001
Alphaproteobacteria
Agrobacterium sp. B133/95 [LXKQ]
745635
745560
-
Trp
CCA
[ENA]
¡û
>W1710500038
FMAC01000028
Alphaproteobacteria
Rhizobium hainanense [FMAC]
3920
3995
+
Trp
CCA
[ENA]
¡û
>W1710500185
FMAF01000054
Alphaproteobacteria
Rhizobium lusitanum [FMAF]
17126
17051
-
Trp
CCA
[ENA]
¡û
>W1710500232
FMAG01000018
Alphaproteobacteria
Rhizobium multihospitium [FMAG]
16937
16862
-
Trp
CCA
[ENA]
¡û
>W1710500279
FMAH01000072
Alphaproteobacteria
Rhizobium miluonense [FMAH]
17242
17167
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK