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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455363 (58 seq.)
>W1711229311
LXYI01000008
Alphaproteobacteria
Sulfitobacter sp. EhC04 [LXYI]
90809
90884
+
Ala
GGC
[ENA]
¡û
>W1711229509
LXYM01000044
Alphaproteobacteria
Sulfitobacter geojensis [LXYM]
617596
617671
+
Ala
GGC
[ENA]
¡û
>C171072513
CP018076
Alphaproteobacteria
Sulfitobacter alexandrii AM1-D1 [CP018076]
278175
278100
-
Ala
GGC
-
¡û
>C171092106
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
2922139
2922214
+
Ala
GGC
-
¡û
>WENV180100960
OAOT01025108
[OAOT] marine metagenome; Mesotrophic water
204
129
-
Ala
GGC
[ENA]
¢þ
>WENV180102894
OAOZ01044928
[OAOZ] marine metagenome; ENVO:00002010
198
273
+
Ala
GGC
[ENA]
¢þ
>WENV180396385
OBPV01001017
[OBPV] marine metagenome; ENVO:00002010
1468
1393
-
Ala
GGC
[ENA]
¢þ
>W141043749
AMGO01000006
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
38033
38108
+
Ala
GGC
[ENA]
¡û
>W08011131
ABSH01000038
Alphaproteobacteria
Octadecabacter antarcticus 307 [ABSH]
10441
10516
+
Ala
GGC
[ENA]
¡û
>W08011240
ABSK01000035
Alphaproteobacteria
Octadecabacter arcticus 238 [ABSK]
16990
16918
-
Ala
GGC
[ENA]
¡û
>WENV181322697
OFKT01028976
[OFKT] marine metagenome; sea ice
289
364
+
Ala
GGC
[ENA]
¢þ
>WENV182547773
OJBT01003233
[OJBT] seawater metagenome; Sea water
929
1004
+
Ala
GGC
[ENA]
¢þ
>WENV182560911
OJDV01000246
[OJDV] seawater metagenome; Sea water
14550
14475
-
Ala
GGC
[ENA]
¢þ
>WENV182567573
OJEO01008955
[OJEO] seawater metagenome; Sea water
756
681
-
Ala
GGC
[ENA]
¢þ
>WENV182568887
OJEX01000523
[OJEX] seawater metagenome; Sea water
4704
4629
-
Ala
GGC
[ENA]
¢þ
>WENV182587475
OJHM01009714
[OJHM] seawater metagenome; Sea water
836
761
-
Ala
GGC
[ENA]
¢þ
>WENV182591966
OJIO01026826
[OJIO] seawater metagenome; Sea water
573
648
+
Ala
GGC
[ENA]
¢þ
>W141284725
JAMC01000001
Alphaproteobacteria
Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565 [JAMC]
621429
621354
-
Ala
GGC
[ENA]
¡û
>W141284788
JAMD01000008
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae H3 [JAMD]
3166
3091
-
Ala
GGC
[ENA]
¡û
>W141290109
JASC01000013
Alphaproteobacteria
Sulfitobacter noctilucae NB-68 [JASC]
150832
150907
+
Ala
GGC
[ENA]
¡û
>W141290146
JASD01000008
Alphaproteobacteria
Sulfitobacter noctilucicola NB-77 [JASD]
555597
555672
+
Ala
GGC
[ENA]
¡û
>W141290207
JASE01000005
Alphaproteobacteria
Sulfitobacter geojensis MM-124 [JASE]
3652658
3652733
+
Ala
GGC
[ENA]
¡û
>W141290249
JASF01000005
Alphaproteobacteria
Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565 [JASF]
1723387
1723312
-
Ala
GGC
[ENA]
¡û
>W141290284
JASG01000004
Alphaproteobacteria
Sulfitobacter guttiformis KCTC 32187 [JASG]
2938074
2938149
+
Ala
GGC
[ENA]
¡û
>W141290318
JASH01000006
Alphaproteobacteria
Sulfitobacter mediterraneus KCTC 32188 [JASH]
182162
182237
+
Ala
GGC
[ENA]
¡û
>WENV183623580
OOGA01013060
[OOGA] marine metagenome; sea ice
594
519
-
Ala
GGC
[ENA]
¢þ
>WENV183624424
OOGD01008547
[OOGD] marine metagenome; sea ice
1151
1076
-
Ala
GGC
[ENA]
¢þ
>WENV183628725
OOGO01012673
[OOGO] marine metagenome; sea ice
388
463
+
Ala
GGC
[ENA]
¢þ
>WENV183631203
OOGU01048996
[OOGU] marine metagenome; sea ice
366
441
+
Ala
GGC
[ENA]
¢þ
>WENV170022867
BCQK01064831
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
359
284
-
Ala
GGC
[ENA]
¢þ
>W141426679
JEMU01000002
Alphaproteobacteria
Sulfitobacter mediterraneus [JEMU]
197089
197014
-
Ala
GGC
[ENA]
¡û
>WENV170568858
FLMP01087650
[FLMP] seawater metagenome; seawater
639
564
-
Ala
GGC
[ENA]
¢þ
>WENV170825372
MDSY01091746
[MDSY] marine metagenome; seawater
359
284
-
Ala
GGC
[ENA]
¢þ
>C181064492
CP022415
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SMR1 [CP022415]
3504356
3504281
-
Ala
GGC
-
¡û
>C181123313
CP025803
Alphaproteobacteria
Sulfitobacter sp. SK011 [CP025803]
3898357
3898432
+
Ala
GGC
-
¡û
>W141564908
JIBC01000009
Alphaproteobacteria
Sulfitobacter sp. 20_GPM-1509m [JIBC]
102809
102734
-
Ala
GGC
[ENA]
¡û
>W1910285342
FRFA01000002
Alphaproteobacteria
Tateyamaria sp. Alg231-49 [FRFA]
65571
65496
-
Ala
GGC
[ENA]
¡û
>W1910443071
FWFT01000002
Alphaproteobacteria
Pseudooctadecabacter jejudonensis CECT 8397 [FWFT]
45437
45512
+
Ala
GGC
[ENA]
¡û
>W1910499696
FXYD01000003
Alphaproteobacteria
Octadecabacter ascidiaceicola CECT 8868 [FXYD]
105814
105889
+
Ala
GGC
[ENA]
¡û
>W1911539368
OMPT01000009
Alphaproteobacteria
Sulfitobacter mediterraneus EL44 [OMPT]
565989
565914
-
Ala
GGC
[ENA]
¡û
>W1810494710
QBFD01000015
Alphaproteobacteria
Sulfitobacter sp. DFL-14 [QBFD]
208247
208322
+
Ala
GGC
[ENA]
¡û
>W1810494769
QBFE01000024
Alphaproteobacteria
Sulfitobacter sp. DFL-23 [QBFE]
290568
290643
+
Ala
GGC
[ENA]
¡û
>W1810494788
QBFF01000025
Alphaproteobacteria
Pseudosulfitobacter sp. DSM 107133 PIC-76 [QBFF]
10389
10464
+
Ala
GGC
[ENA]
¡û
>W1810504293
QBKU01000001
Alphaproteobacteria
Sulfitobacter mediterraneus DSM 12244 [QBKU]
173404
173479
+
Ala
GGC
[ENA]
¡û
>W1810532411
QCYG01000003
Alphaproteobacteria
Thalassorhabdomicrobium marinisediminis BH-SD16 [QCYG]
103256
103331
+
Ala
GGC
[ENA]
¡û
>W1810913108
QVMW01000001
Alphaproteobacteria
Rhodobacteraceae bacterium 63075 [QVMW]
328447
328372
-
Ala
GGC
[ENA]
¡û
>C151092063
CP012160
Alphaproteobacteria
Octadecabacter temperatus SB1 [CP012160]
419769
419694
-
Ala
GGC
-
¡û
>W1511482987
JWLL01000001
Alphaproteobacteria
Tateyamaria sp. ANG-S1 [JWLL]
117468
117393
-
Ala
GGC
[ENA]
¡û
>C131005935
CP003740
Alphaproteobacteria
Octadecabacter antarcticus 307 [CP003740]
4076056
4076131
+
Ala
GGC
[Ensembl]
¡û
>C131006000
CP003742
Alphaproteobacteria
Octadecabacter arcticus 238 [CP003742]
417496
417421
-
Ala
GGC
[Ensembl]
¡û
>W1611013181
LXYI01000008
Alphaproteobacteria
Sulfitobacter sp. EhC04 [LXYI]
90809
90884
+
Ala
GGC
[ENA]
¡û
>W1611013379
LXYM01000044
Alphaproteobacteria
Sulfitobacter geojensis [LXYM]
617596
617671
+
Ala
GGC
[ENA]
¡û
>WENV078232
AAFZ01011521
Fossil microbial community from Whale Fall (Santa Cruz Basin)
136
59
-
Ala
GGC
[ENA]
>WENV078290
AAFZ01021812
Fossil microbial community from Whale Fall (Santa Cruz Basin)
549
472
-
Ala
GGC
[ENA]
>W1710531632
FNPR01000003
Alphaproteobacteria
Lentibacter algarum [FNPR]
413741
413816
+
Ala
GGC
[ENA]
¡û
>W1710559754
FOMW01000010
Alphaproteobacteria
Sulfitobacter brevis [FOMW]
46386
46311
-
Ala
GGC
[ENA]
¡û
>W1710584530
FQVP01000003
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae [FQVP]
25170
25095
-
Ala
GGC
[ENA]
¡û
>W1710594949
FSRP01000001
Alphaproteobacteria
Octadecabacter temperatus [FSRP]
103573
103498
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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