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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455369 (72 seq.)
>W1710989595
LPWA01000153
Alphaproteobacteria
Mesorhizobium loti [LPWA]
162735
162660
-
Ala
CGC
[ENA]
¡û
>W1711257267
LYTM01000045
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
5029
4954
-
Ala
CGC
[ENA]
¡û
>W1711257346
LYTP01000010
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
77565
77490
-
Ala
CGC
[ENA]
¡û
>W1711286673
LZTH01000034
Alphaproteobacteria
Mesorhizobium loti [LZTH]
510999
510924
-
Ala
CGC
[ENA]
¡û
>W1711286731
LZTI01000026
Alphaproteobacteria
Mesorhizobium loti [LZTI]
8404
8479
+
Ala
CGC
[ENA]
¡û
>W1711286762
LZTJ01000001
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
1239821
1239746
-
Ala
CGC
[ENA]
¡û
>W1711286818
LZTK01000001
Alphaproteobacteria
Mesorhizobium loti [LZTK]
1190279
1190204
-
Ala
CGC
[ENA]
¡û
>W1711286852
LZTL01000001
Alphaproteobacteria
Mesorhizobium loti [LZTL]
1241112
1241037
-
Ala
CGC
[ENA]
¡û
>W1711353160
MDDT01000012
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
38692
38767
+
Ala
CGC
[ENA]
¡û
>W1711353217
MDDU01000008
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
81215
81140
-
Ala
CGC
[ENA]
¡û
>W1711354736
MDFL01000106
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
34381
34306
-
Ala
CGC
[ENA]
¡û
>W1711385419
MEEE01000351
Alphaproteobacteria
Mesorhizobium sp. SCN 65-12 [MEEE]
3714
3639
-
Ala
CGC
[ENA]
¡û
>W131219429
ATYO01000025
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
69657
69732
+
Ala
CGC
[ENA]
¡û
>W1711505391
MKVL01000032
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
411623
411698
+
Ala
CGC
[ENA]
¡û
>C013696
BA000012
Alphaproteobacteria
Mesorhizobium japonicum MAFF 303099 [BA000012]
3320515
3320590
+
Ala
CGC
[Ensembl]
¡û
>WENV180020024
FTCV01000732
[FTCV] metagenome; soil
51
126
+
Ala
CGC
[ENA]
¢þ
>WENV181168183
OEIU01191662
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
121
46
-
Ala
CGC
[ENA]
¢þ
>WENV181308162
OFIS01000357
[OFIS] sludge metagenome; sludge
1863
1788
-
Ala
CGC
[ENA]
¢þ
>WENV181311455
OFJB01002283
[OFJB] sludge metagenome; sludge
1700
1775
+
Ala
CGC
[ENA]
¢þ
>WENV181312213
OFJB01055777
[OFJB] sludge metagenome; sludge
831
756
-
Ala
CGC
[ENA]
¢þ
>WENV181401848
OFTX01010330
[OFTX] sludge metagenome; sludge
438
363
-
Ala
CGC
[ENA]
¢þ
>WENV181402364
OFTY01000853
[OFTY] sludge metagenome; sludge
16140
16215
+
Ala
CGC
[ENA]
¢þ
>W141200973
AZAM01000003
Alphaproteobacteria
Mesorhizobium japonicum R7A [AZAM]
560408
560483
+
Ala
CGC
[ENA]
¡û
>W141266702
CCMY01000207
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
803
878
+
Ala
CGC
[ENA]
¡û
>W141266727
CCMZ01000034
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
156416
156491
+
Ala
CGC
[ENA]
¡û
>W141266761
CCNA01000005
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
121920
121995
+
Ala
CGC
[ENA]
¡û
>W141266842
CCNB01000046
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
67733
67808
+
Ala
CGC
[ENA]
¡û
>W141266882
CCNC01000163
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
36876
36951
+
Ala
CGC
[ENA]
¡û
>W141266895
CCNE01000007
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
79320
79245
-
Ala
CGC
[ENA]
¡û
>C191125556
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
3681900
3681825
-
Ala
CGC
-
¡û
>C191125601
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
2942716
2942641
-
Ala
CGC
-
¡û
>C191125632
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
5353520
5353595
+
Ala
CGC
-
¡û
>C191125708
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
2158586
2158511
-
Ala
CGC
-
¡û
>C191125763
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
1184329
1184254
-
Ala
CGC
-
¡û
>C191125775
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
3315497
3315572
+
Ala
CGC
-
¡û
>C191125832
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
3659874
3659949
+
Ala
CGC
-
¡û
>W1910840325
MZXX01000020
Alphaproteobacteria
Mesorhizobium erdmanii Opo-242 [MZXX]
85741
85666
-
Ala
CGC
[ENA]
¡û
>W1911242178
NSFO01000001
Alphaproteobacteria
Mesorhizobium loti R7ANSxCC1192 [NSFO]
1249304
1249229
-
Ala
CGC
[ENA]
¡û
>W1911242238
NSFP01000002
Alphaproteobacteria
Mesorhizobium loti R7ANSxAA22 [NSFP]
684725
684650
-
Ala
CGC
[ENA]
¡û
>W1911242286
NSFQ01000002
Alphaproteobacteria
Mesorhizobium loti R7ANSx3876 [NSFQ]
8354
8429
+
Ala
CGC
[ENA]
¡û
>W1911242331
NSFR01000002
Alphaproteobacteria
Mesorhizobium loti R7ANSx3859 [NSFR]
684581
684506
-
Ala
CGC
[ENA]
¡û
>W1911242396
NSFS01000003
Alphaproteobacteria
Mesorhizobium loti R7ANSx1497 [NSFS]
511003
510928
-
Ala
CGC
[ENA]
¡û
>W1911242473
NSFT01000028
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
9136
9211
+
Ala
CGC
[ENA]
¡û
>W1911242512
NSFU01000011
Alphaproteobacteria
Mesorhizobium sp. WSM4312 [NSFU]
16424
16499
+
Ala
CGC
[ENA]
¡û
>W1911242553
NSFV01000005
Alphaproteobacteria
Mesorhizobium sp. WSM4311 [NSFV]
16406
16481
+
Ala
CGC
[ENA]
¡û
>W1911242616
NSFW01000015
Alphaproteobacteria
Mesorhizobium sp. WSM4308 [NSFW]
16424
16499
+
Ala
CGC
[ENA]
¡û
>W1911242670
NSFX01000013
Alphaproteobacteria
Mesorhizobium sp. WSM4304 [NSFX]
16424
16499
+
Ala
CGC
[ENA]
¡û
>W1911242719
NSFY01000021
Alphaproteobacteria
Mesorhizobium sp. WSM3882 [NSFY]
8665
8740
+
Ala
CGC
[ENA]
¡û
>W1911242735
NSFZ01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
498578
498503
-
Ala
CGC
[ENA]
¡û
>W1911242774
NSGA01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
655858
655783
-
Ala
CGC
[ENA]
¡û
>W1911242859
NSGB01000022
Alphaproteobacteria
Mesorhizobium sp. WSM3868 [NSGB]
49899
49824
-
Ala
CGC
[ENA]
¡û
>W1911242878
NSGC01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3866 [NSGC]
301721
301646
-
Ala
CGC
[ENA]
¡û
>W1911242938
NSGD01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3864 [NSGD]
54661
54586
-
Ala
CGC
[ENA]
¡û
>W1911242986
NSGE01000005
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
486669
486744
+
Ala
CGC
[ENA]
¡û
>W1911243023
NSGF01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
245467
245392
-
Ala
CGC
[ENA]
¡û
>W1911243074
NSGG01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
89413
89488
+
Ala
CGC
[ENA]
¡û
>W1911682398
QKOD01000006
Alphaproteobacteria
Mesorhizobium japonicum Opo-235 [QKOD]
373600
373675
+
Ala
CGC
[ENA]
¡û
>W1911695543
QMBQ01000005
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
118122
118047
-
Ala
CGC
[ENA]
¡û
>W1810699017
QMBP01000015
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
1243
1318
+
Ala
CGC
[ENA]
¡û
>W1511399931
JTGD01000069
Alphaproteobacteria
Mesorhizobium sp. F7 [JTGD]
26089
26164
+
Ala
CGC
[ENA]
¡û
>W1610083655
CCND01000002
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
251312
251237
-
Ala
CGC
[ENA]
¡û
>W1610844471
LPWA01000153
Alphaproteobacteria
Mesorhizobium loti [LPWA]
162735
162660
-
Ala
CGC
[ENA]
¡û
>W1611020243
LYTM01000045
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
5029
4954
-
Ala
CGC
[ENA]
¡û
>W1611020368
LYTP01000010
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
77565
77490
-
Ala
CGC
[ENA]
¡û
>W1611044234
LZTH01000034
Alphaproteobacteria
Mesorhizobium loti [LZTH]
510999
510924
-
Ala
CGC
[ENA]
¡û
>W1611044292
LZTI01000026
Alphaproteobacteria
Mesorhizobium loti [LZTI]
8404
8479
+
Ala
CGC
[ENA]
¡û
>W1611044323
LZTJ01000001
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
1239821
1239746
-
Ala
CGC
[ENA]
¡û
>W1611044379
LZTK01000001
Alphaproteobacteria
Mesorhizobium loti [LZTK]
1190279
1190204
-
Ala
CGC
[ENA]
¡û
>W1611044413
LZTL01000001
Alphaproteobacteria
Mesorhizobium loti [LZTL]
1241112
1241037
-
Ala
CGC
[ENA]
¡û
>W1710088672
CCND01000002
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
251312
251237
-
Ala
CGC
[ENA]
¡û
>W1710571238
FOVT01000004
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
115564
115639
+
Ala
CGC
[ENA]
¡û
>W1710601629
FUXL01000021
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
47823
47748
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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