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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455370 (62 seq.)
>W1710864396
LMFV01000045
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
68959
69034
+
Lys
CTT
[ENA]
¡û
>W1710989564
LPWA01000046
Alphaproteobacteria
Mesorhizobium loti [LPWA]
44952
44877
-
Lys
CTT
[ENA]
¡û
>W1711257252
LYTM01000027
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
13767
13842
+
Lys
CTT
[ENA]
¡û
>W1711257347
LYTP01000011
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
78542
78617
+
Lys
CTT
[ENA]
¡û
>W131219427
ATYO01000024
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
69630
69555
-
Lys
CTT
[ENA]
¡û
>W1711353164
MDDT01000016
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
78263
78188
-
Lys
CTT
[ENA]
¡û
>W1711353237
MDDU01000046
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
155729
155804
+
Lys
CTT
[ENA]
¡û
>W1711353648
MDET01000001
Alphaproteobacteria
Pseudaminobacter manganicus [MDET]
170185
170260
+
Lys
CTT
[ENA]
¡û
>W1711354726
MDFL01000001
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
329585
329660
+
Lys
CTT
[ENA]
¡û
>W1711385407
MEEE01000167
Alphaproteobacteria
Mesorhizobium sp. SCN 65-12 [MEEE]
6189
6264
+
Lys
CTT
[ENA]
¡û
>W1711385438
MEEF01000042
Alphaproteobacteria
Mesorhizobium sp. SCN 65-20 [MEEF]
18069
17994
-
Lys
CTT
[ENA]
¡û
>W1711501765
MKRZ01000080
Alphaproteobacteria
Mesorhizobium sp. 61-13 [MKRZ]
14582
14657
+
Lys
CTT
[ENA]
¡û
>W1711505371
MKVL01000010
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
808531
808456
-
Lys
CTT
[ENA]
¡û
>WENV180020279
FTCZ01000919
[FTCZ] metagenome; soil
1309
1384
+
Lys
CTT
[ENA]
¢þ
>W141093750
AVBN01000037
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C1 [AVBN]
97320
97395
+
Lys
CTT
[ENA]
¡û
>W141093782
AVBO01000013
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C2 [AVBO]
97340
97415
+
Lys
CTT
[ENA]
¡û
>W141093814
AVBP01000001
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C3 [AVBP]
106373
106298
-
Lys
CTT
[ENA]
¡û
>W141093860
AVBQ01000001
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C4 [AVBQ]
106370
106295
-
Lys
CTT
[ENA]
¡û
>WENV181166881
OEIU01003705
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4989
5064
+
Lys
CTT
[ENA]
¢þ
>WENV181308236
OFIS01001416
[OFIS] sludge metagenome; sludge
4588
4513
-
Lys
CTT
[ENA]
¢þ
>WENV181311582
OFJB01004888
[OFJB] sludge metagenome; sludge
3212
3287
+
Lys
CTT
[ENA]
¢þ
>WENV181401689
OFTX01002745
[OFTX] sludge metagenome; sludge
2424
2349
-
Lys
CTT
[ENA]
¢þ
>WENV181402579
OFTY01005695
[OFTY] sludge metagenome; sludge
1093
1018
-
Lys
CTT
[ENA]
¢þ
>W141242852
CAIU01000041
Alphaproteobacteria
Pseudaminobacter salicylatoxidans KCT001 [CAIU]
2064
2139
+
Lys
CTT
[ENA]
¡û
>W141266674
CCMY01000032
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
54805
54730
-
Lys
CTT
[ENA]
¡û
>W141266737
CCMZ01000056
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
320836
320761
-
Lys
CTT
[ENA]
¡û
>W141266769
CCNA01000014
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
42661
42736
+
Lys
CTT
[ENA]
¡û
>W141266803
CCNB01000004
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
617854
617779
-
Lys
CTT
[ENA]
¡û
>W141266866
CCNC01000112
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
70037
69962
-
Lys
CTT
[ENA]
¡û
>W141266917
CCNE01000023
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
580828
580753
-
Lys
CTT
[ENA]
¡û
>C191125487
CP034443
Alphaproteobacteria
Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 [CP034443]
5410990
5411065
+
Lys
CTT
-
¡û
>C191125539
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
6071675
6071750
+
Lys
CTT
-
¡û
>C191125611
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
741461
741386
-
Lys
CTT
-
¡û
>C191125617
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
852387
852462
+
Lys
CTT
-
¡û
>C191125678
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
4528466
4528541
+
Lys
CTT
-
¡û
>C191125731
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
4184554
4184629
+
Lys
CTT
-
¡û
>C191125785
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
5684896
5684971
+
Lys
CTT
-
¡û
>C191125840
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
5596151
5596226
+
Lys
CTT
-
¡û
>C191184143
CP040914
Alphaproteobacteria
Mesorhizobium sp. 8 [CP040914]
1223648
1223723
+
Lys
CTT
-
¡û
>W1910693401
MDEO01000033
Alphaproteobacteria
Mesorhizobium hungaricum UASWS1009 [MDEO]
533718
533643
-
Lys
CTT
[ENA]
¡û
>W1911242429
NSFT01000001
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
61309
61384
+
Lys
CTT
[ENA]
¡û
>W1911242717
NSFY01000020
Alphaproteobacteria
Mesorhizobium sp. WSM3882 [NSFY]
48638
48563
-
Lys
CTT
[ENA]
¡û
>W1911242764
NSFZ01000021
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
14949
15024
+
Lys
CTT
[ENA]
¡û
>W1911242815
NSGA01000027
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
46106
46031
-
Lys
CTT
[ENA]
¡û
>W1911242857
NSGB01000021
Alphaproteobacteria
Mesorhizobium sp. WSM3868 [NSGB]
69704
69629
-
Lys
CTT
[ENA]
¡û
>W1911242901
NSGC01000010
Alphaproteobacteria
Mesorhizobium sp. WSM3866 [NSGC]
274344
274269
-
Lys
CTT
[ENA]
¡û
>W1911242914
NSGD01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3864 [NSGD]
17205
17280
+
Lys
CTT
[ENA]
¡û
>W1911242968
NSGE01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
851528
851453
-
Lys
CTT
[ENA]
¡û
>W1911243043
NSGF01000009
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
195599
195674
+
Lys
CTT
[ENA]
¡û
>W1911243066
NSGG01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
475053
474978
-
Lys
CTT
[ENA]
¡û
>W1911695524
QMBQ01000003
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
212648
212723
+
Lys
CTT
[ENA]
¡û
>W1810390406
PXYL01000001
Alphaproteobacteria
Mesorhizobium soli JCM 19897 [PXYL]
231109
231184
+
Lys
CTT
[ENA]
¡û
>W1810595916
QGGG01000007
Alphaproteobacteria
Pseudaminobacter salicylatoxidans DSM 6986 [QGGG]
186127
186202
+
Lys
CTT
[ENA]
¡û
>W1810699011
QMBP01000013
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
147183
147258
+
Lys
CTT
[ENA]
¡û
>W1511399939
JTGD01000084
Alphaproteobacteria
Mesorhizobium sp. F7 [JTGD]
14222
14297
+
Lys
CTT
[ENA]
¡û
>W1610083658
CCND01000006
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
250135
250060
-
Lys
CTT
[ENA]
¡û
>W1610726742
LMFV01000045
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
68959
69034
+
Lys
CTT
[ENA]
¡û
>W1610844440
LPWA01000046
Alphaproteobacteria
Mesorhizobium loti [LPWA]
44952
44877
-
Lys
CTT
[ENA]
¡û
>W1611020228
LYTM01000027
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
13767
13842
+
Lys
CTT
[ENA]
¡û
>W1611020369
LYTP01000011
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
78542
78617
+
Lys
CTT
[ENA]
¡û
>W1710088675
CCND01000006
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
250135
250060
-
Lys
CTT
[ENA]
¡û
>W1710571236
FOVT01000003
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
70228
70153
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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