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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455435 (48 seq.)
>W1711150964
LVMH01000257
Gammaproteobacteria
Escherichia coli [LVMH]
3248
3323
+
Met
CAT
[ENA]
¡û
>W1711152762
LVND01000255
Gammaproteobacteria
Escherichia coli [LVND]
2845
2770
-
Met
CAT
[ENA]
¡û
>W1711333796
MBPW01000108
Gammaproteobacteria
Escherichia coli [MBPW]
1539
1614
+
Met
CAT
[ENA]
¡û
>WENV180044263
MAVD01000003
[MAVD] viral metagenome; DNA from tracheal sample collected at farm Nasib, Godhra
17284
17359
+
Ile2
CAT
[ENA]
¢þ
>WENV180124090
OASX01001889
[OASX] human gut metagenome; faeces
4592
4517
-
Ile2
CAT
[ENA]
¢þ
>C181099004
CP024282
Gammaproteobacteria
Escherichia albertii 2014C-4356 [CP024282]
3290927
3291002
+
Met
CAT
-
¡û
>C181116660
CP025401
Gammaproteobacteria
Escherichia coli MS8345 [CP025401]
1994278
1994203
-
Met
CAT
-
¡û
>C181192775
CP030781
Gammaproteobacteria
Escherichia albertii 07-3866 [CP030781]
2026900
2026825
-
Met
CAT
-
¡û
>C181192870
CP030783
Gammaproteobacteria
Escherichia albertii 2012EL-1823B [CP030783]
2310963
2310888
-
Met
CAT
-
¡û
>C191120588
CP034162
Gammaproteobacteria
Escherichia albertii 06-3542 [CP034162]
630042
630117
+
Met
CAT
-
¡û
>C191120759
CP034166
Gammaproteobacteria
Escherichia albertii 2014C-4015 [CP034166]
703335
703260
-
Met
CAT
-
¡û
>W1910038448
BEGZ01000005
Gammaproteobacteria
Escherichia albertii Hiroshima3582 [BEGZ]
1846
1771
-
Met
CAT
[ENA]
¡û
>W1910088513
BFQO01000007
Gammaproteobacteria
Escherichia coli JML133 [BFQO]
28681
28606
-
Met
CAT
[ENA]
¡û
>W1910095843
BFUP01000612
Gammaproteobacteria
Escherichia coli JML268 [BFUP]
1785
1710
-
Met
CAT
[ENA]
¡û
>W1910175860
BJCT01000059
Gammaproteobacteria
Escherichia albertii ZAH-1-3 [BJCT]
4473
4548
+
Met
CAT
[ENA]
¡û
>W1910176004
BJCV01000106
Gammaproteobacteria
Escherichia albertii ZAI-52-1 [BJCV]
2121
2046
-
Met
CAT
[ENA]
¡û
>W1910176089
BJCW01000051
Gammaproteobacteria
Escherichia albertii U350-1 [BJCW]
1983
1908
-
Met
CAT
[ENA]
¡û
>W1910176173
BJCX01000118
Gammaproteobacteria
Escherichia albertii AZK-6-2 [BJCX]
2121
2046
-
Met
CAT
[ENA]
¡û
>W1910176624
BJDD01000057
Gammaproteobacteria
Escherichia albertii Mkr3965 [BJDD]
4473
4548
+
Met
CAT
[ENA]
¡û
>W1910176705
BJDE01000028
Gammaproteobacteria
Escherichia albertii Esc18014 [BJDE]
2121
2046
-
Met
CAT
[ENA]
¡û
>W1911012758
NLKB01000036
Gammaproteobacteria
Escherichia coli MOD1-EC5630 [NLKB]
147
72
-
Met
CAT
[ENA]
¡û
>W1911042577
NMAO01000028
Gammaproteobacteria
Escherichia coli MOD1-EC6260 [NMAO]
6466
6541
+
Met
CAT
[ENA]
¡û
>W1911053752
NMGL01000029
Gammaproteobacteria
Escherichia coli MOD1-EC5969 [NMGL]
6423
6348
-
Met
CAT
[ENA]
¡û
>W1911097840
NNZF01000022
Gammaproteobacteria
Escherichia coli MOD1-EC5897 [NNZF]
37330
37405
+
Met
CAT
[ENA]
¡û
>W1810033692
BGXJ01000048
Gammaproteobacteria
Escherichia coli TUM18730 [BGXJ]
1739
1814
+
Met
CAT
[ENA]
¡û
>W1810307140
PTRR01000002
Gammaproteobacteria
Escherichia albertii MOD1-EC1724 [PTRR]
22391
22316
-
Met
CAT
[ENA]
¡û
>W1810308960
PTSQ01000005
Gammaproteobacteria
Escherichia albertii MOD1-EC5952 [PTSQ]
266973
267048
+
Met
CAT
[ENA]
¡û
>W1810738026
QOMG01000073
Gammaproteobacteria
Escherichia coli SC378 [QOMG]
9541
9616
+
Met
CAT
[ENA]
¡û
>C161050074
CP013031
Gammaproteobacteria
Escherichia coli H1827/12 [CP013031]
2800623
2800548
-
Met
CAT
-
¡û
>W1610054844
BBVE01000009
Gammaproteobacteria
Escherichia albertii [BBVE]
2046
1971
-
Met
CAT
[ENA]
¡û
>W1610055122
BBVI01000034
Gammaproteobacteria
Escherichia albertii [BBVI]
1884
1809
-
Met
CAT
[ENA]
¡û
>W1610055178
BBVJ01000075
Gammaproteobacteria
Escherichia albertii [BBVJ]
3370
3445
+
Met
CAT
[ENA]
¡û
>W1610055376
BBVN01000010
Gammaproteobacteria
Escherichia albertii [BBVN]
176106
176181
+
Met
CAT
[ENA]
¡û
>W1610055727
BBVS01000054
Gammaproteobacteria
Escherichia albertii [BBVS]
1818
1743
-
Met
CAT
[ENA]
¡û
>W1610055788
BBVT01000057
Gammaproteobacteria
Escherichia albertii [BBVT]
2339
2264
-
Met
CAT
[ENA]
¡û
>W1610056172
BBWA01000002
Gammaproteobacteria
Escherichia albertii [BBWA]
570125
570200
+
Met
CAT
[ENA]
¡û
>W1610056377
BBWC01000028
Gammaproteobacteria
Escherichia albertii [BBWC]
1776
1701
-
Met
CAT
[ENA]
¡û
>W1610961504
LVMH01000257
Gammaproteobacteria
Escherichia coli [LVMH]
3248
3323
+
Met
CAT
[ENA]
¡û
>W1610963302
LVND01000255
Gammaproteobacteria
Escherichia coli [LVND]
2845
2770
-
Met
CAT
[ENA]
¡û
>W1611065990
MBPW01000108
Gammaproteobacteria
Escherichia coli [MBPW]
1539
1614
+
Met
CAT
[ENA]
¡û
>W1710051543
BBVE01000009
Gammaproteobacteria
Escherichia albertii [BBVE]
2046
1971
-
Met
CAT
[ENA]
¡û
>W1710051821
BBVI01000034
Gammaproteobacteria
Escherichia albertii [BBVI]
1884
1809
-
Met
CAT
[ENA]
¡û
>W1710051877
BBVJ01000075
Gammaproteobacteria
Escherichia albertii [BBVJ]
3370
3445
+
Met
CAT
[ENA]
¡û
>W1710052075
BBVN01000010
Gammaproteobacteria
Escherichia albertii [BBVN]
176106
176181
+
Met
CAT
[ENA]
¡û
>W1710052426
BBVS01000054
Gammaproteobacteria
Escherichia albertii [BBVS]
1818
1743
-
Met
CAT
[ENA]
¡û
>W1710052487
BBVT01000057
Gammaproteobacteria
Escherichia albertii [BBVT]
2339
2264
-
Met
CAT
[ENA]
¡û
>W1710052871
BBWA01000002
Gammaproteobacteria
Escherichia albertii [BBWA]
570125
570200
+
Met
CAT
[ENA]
¡û
>W1710053076
BBWC01000028
Gammaproteobacteria
Escherichia albertii [BBWC]
1776
1701
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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