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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455506 (38 seq.)
>W1710785376
LJHU01000081
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
18752
18677
-
Met
CAT
[ENA]
¡û
>W1711501744
MKRY01000299
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
3098
3173
+
Met
CAT
[ENA]
¡û
>W1711718108
MTHE01000005
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
266092
266017
-
Met
CAT
[ENA]
¡û
>W1712106173
NIVP01000003
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
6006
5931
-
Met
CAT
[ENA]
¡û
>WENV180014045
FPIC01036484
[FPIC] soil metagenome; Soil
993
918
-
Ile2
CAT
[ENA]
¢þ
>WENV180017127
FSWM01000753
[FSWM] metagenome; soil
18606
18681
+
Ile2
CAT
[ENA]
¢þ
>WENV180018681
FTAG01001423
[FTAG] metagenome; soil
9152
9227
+
Ile2
CAT
[ENA]
¢þ
>WENV180022229
FTFU01001524
[FTFU] metagenome; soil
12787
12862
+
Ile2
CAT
[ENA]
¢þ
>WENV180023821
FTIF01000949
[FTIF] metagenome; soil
29010
28935
-
Ile2
CAT
[ENA]
¢þ
>WENV180023822
FTIF01000961
[FTIF] metagenome; soil
3503
3428
-
Ile2
CAT
[ENA]
¢þ
>WENV180025986
FTIR01001653
[FTIR] metagenome; soil
35274
35349
+
Ile2
CAT
[ENA]
¢þ
>WENV180029750
FTJL01003169
[FTJL] metagenome; soil
3406
3331
-
Ile2
CAT
[ENA]
¢þ
>WENV180035418
FTKX01000027
[FTKX] metagenome; soil
68810
68735
-
Ile2
CAT
[ENA]
¢þ
>WENV180103579
OAPA01076157
[OAPA] marine metagenome; ENVO:00002010
174
249
+
Ile2
CAT
[ENA]
¢þ
>WENV181402317
OFTY01000558
[OFTY] sludge metagenome; sludge
16544
16619
+
Ile2
CAT
[ENA]
¢þ
>WENV181732247
OGQD01018881
[OGQD] human gut metagenome; faeces
688
763
+
Ile2
CAT
[ENA]
¢þ
>WENV183730956
PJTS01002653
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1730
1656
-
Ile2
CAT
[ENA]
¢þ
>WENV183733444
PJTY01002151
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
2264
2339
+
Ile2
CAT
[ENA]
¢þ
>WENV183735488
PJUB01000014
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
89171
89245
+
Ile2
CAT
[ENA]
¢þ
>WENV183738243
PJUD01133515
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
169
243
+
Ile2
CAT
[ENA]
¢þ
>WENV183738827
PJUE01000263
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
26686
26760
+
Ile2
CAT
[ENA]
¢þ
>WENV183740066
PJUF01000265
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
13283
13209
-
Ile2
CAT
[ENA]
¢þ
>WENV170192930
CEPG01033442
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
144
219
+
Met
CAT
[ENA]
¢þ
>WENV170200863
CEPP01001745
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
23129
23054
-
Met
CAT
[ENA]
¢þ
>WENV170646062
JQGF01021040
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
58
133
+
Met
CAT
[ENA]
¢þ
>WENV170680702
LFEF01012360
[LFEF] freshwater metagenome; waterbloom
436
363
-
Met
CAT
[ENA]
¢þ
>C191093984
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
391264
391339
+
Met
CAT
-
¡û
>C191157382
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
1785622
1785697
+
Met
CAT
-
¡û
>C191159634
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
1607201
1607126
-
Met
CAT
-
¡û
>C191189123
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
2499289
2499362
+
Met
CAT
-
¡û
>C191220457
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
690646
690571
-
Met
CAT
-
¡û
>W141551937
JHOF01000023
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
13570
13645
+
Met
CAT
[ENA]
¡û
>W1910374314
FUIE01000011
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
21683
21608
-
Met
CAT
[ENA]
¡û
>W1911737862
QTTA01000017
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
129250
129325
+
Met
CAT
[ENA]
¡û
>W11123444
ADUI01000179
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
4589
4664
+
Met
CAT
[ENA]
¡û
>W1511596065
LBNT01000010
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
17568
17493
-
Met
CAT
[ENA]
¡û
>C161089845
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
321517
321442
-
Met
CAT
[Ensembl]
¡û
>W1610649182
LJHU01000081
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
18752
18677
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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