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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455523 (39 seq.)
>A171003610
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
660765
660693
-
Arg
CCG
-
¡û
>A171004849
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
3960309
3960237
-
Arg
CCG
-
¡û
>A171004905
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4412767
4412695
-
Arg
CCG
-
¡û
>A171004933
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
788200
788272
+
Arg
CCG
-
¡û
>A171004985
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
760462
760534
+
Arg
CCG
-
¡û
>A171005037
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
785005
785077
+
Arg
CCG
-
¡û
>A171005124
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
925071
924999
-
Arg
CCG
-
¡û
>A171005246
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
903150
903223
+
Arg
CCG
-
¡û
>At1530
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
798626
798555
-
Arg
CCG
[Ensembl]
¡û
>WENV170724366
LSQX01302579
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
20457
20529
+
Arg
CCG
[ENA]
¢þ
>WENV170784242
MCHG01000199
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
22702
22631
-
Arg
CCG
[ENA]
¢þ
>W1910569260
JJOR01000137
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
24279
24351
+
Arg
CCG
[ENA]
¡û
>W1910569483
JJOW01000086
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
12488
12559
+
Arg
CCG
[ENA]
¡û
>W1910569564
JJOX01000079
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
327301
327372
+
Arg
CCG
[ENA]
¡û
>W1910569591
JJOY01000013
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
22668
22739
+
Arg
CCG
[ENA]
¡û
>W1910569765
JJPB01000108
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
24321
24393
+
Arg
CCG
[ENA]
¡û
>W1910569833
JJPC01000163
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
25452
25524
+
Arg
CCG
[ENA]
¡û
>W1910569865
JJPD01000148
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
21505
21577
+
Arg
CCG
[ENA]
¡û
>W1910570252
JJPL01000045
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
24235
24307
+
Arg
CCG
[ENA]
¡û
>W1910570310
JJPM01000100
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
2343
2271
-
Arg
CCG
[ENA]
¡û
>W1910570352
JJPN01000026
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
29586
29658
+
Arg
CCG
[ENA]
¡û
>W1910570428
JJPO01000127
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
131641
131569
-
Arg
CCG
[ENA]
¡û
>W1910570500
JJPQ01000007
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
24307
24379
+
Arg
CCG
[ENA]
¡û
>W1910570604
JJPS01000032
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
29526
29598
+
Arg
CCG
[ENA]
¡û
>W1910570667
JJPT01000055
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
27802
27730
-
Arg
CCG
[ENA]
¡û
>W1910570770
JJPV01000046
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
24279
24351
+
Arg
CCG
[ENA]
¡û
>W1910570839
JJPW01000081
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
11777
11849
+
Arg
CCG
[ENA]
¡û
>W1910570981
JJPZ01000107
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
11720
11792
+
Arg
CCG
[ENA]
¡û
>W1910571424
JJQI01000041
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
29601
29673
+
Arg
CCG
[ENA]
¡û
>W1910571505
JJQJ01000221
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
24285
24357
+
Arg
CCG
[ENA]
¡û
>W1910571556
JJQK01000274
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
20532
20604
+
Arg
CCG
[ENA]
¡û
>W1910571740
JJQN01000195
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
47803
47875
+
Arg
CCG
[ENA]
¡û
>W1910571887
JJQQ01000153
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
29555
29627
+
Arg
CCG
[ENA]
¡û
>W1910571910
JJQR01000034
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
11767
11839
+
Arg
CCG
[ENA]
¡û
>W1910571989
JJQS01000100
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
25383
25455
+
Arg
CCG
[ENA]
¡û
>W1910572035
JJQT01000182
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
11767
11839
+
Arg
CCG
[ENA]
¡û
>W1910572304
JJQZ01000051
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
25383
25455
+
Arg
CCG
[ENA]
¡û
>W1910572425
JJRB01000088
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
25459
25531
+
Arg
CCG
[ENA]
¡û
>W1910694788
MDTP02000075
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
6828
6899
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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