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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455564 (65 seq.)
>A171001149
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
758134
758061
-
Pro
CGG
-
¡û
>A171002463
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
2940519
2940446
-
Pro
CGG
-
¡û
>A171003088
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1017192
1017264
+
Pro
CGG
-
¡û
>A171006946
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
218312
218240
-
Pro
CGG
-
¡û
>A171006995
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
963933
964006
+
Pro
CGG
-
¡û
>WENV180318476
OBKM01001197
[OBKM] metagenome; water
9303
9376
+
Pro
CGG
[ENA]
¢þ
>WENV180318953
OBKM01069914
[OBKM] metagenome; water
75
2
-
Pro
CGG
[ENA]
¢þ
>WENV170008841
APHM01009597
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
772
700
-
Pro
CGG
[ENA]
¢þ
>WENV170008844
APHM01010020
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
680
753
+
Pro
CGG
[ENA]
¢þ
>WENV170008987
APHM01017826
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
868
940
+
Pro
CGG
[ENA]
¢þ
>WENV170679792
LFCJ01000508
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
23960
24033
+
Pro
CGG
[ENA]
¢þ
>WENV170680120
LFCJ01004491
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6778
6853
+
Pro
CGG
[ENA]
¢þ
>WENV170680122
LFCJ01004519
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7206
7278
+
Pro
CGG
[ENA]
¢þ
>WENV170681513
LFFM01001163
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
7280
7207
-
Pro
CGG
[ENA]
¢þ
>WENV170702113
LKMJ01000536
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1099
1172
+
Pro
CGG
[ENA]
¢þ
>WENV170702350
LKMJ01001468
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
20124
20196
+
Pro
CGG
[ENA]
¢þ
>WENV170702597
LKMJ01002798
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3173
3246
+
Pro
CGG
[ENA]
¢þ
>WENV170703477
LKMJ01012410
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4379
4451
+
Pro
CGG
[ENA]
¢þ
>WENV170703501
LKMJ01012722
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3342
3415
+
Pro
CGG
[ENA]
¢þ
>WENV170703561
LKMJ01013642
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3261
3189
-
Pro
CGG
[ENA]
¢þ
>WENV170704014
LKMJ01020699
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2826
2899
+
Pro
CGG
[ENA]
¢þ
>W1920000131
FNKQ01000001
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
317830
317903
+
Pro
CGG
[ENA]
¡û
>W1920000136
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
1107095
1107167
+
Pro
CGG
[ENA]
¡û
>W1920000140
FOFD01000006
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
303865
303938
+
Pro
CGG
[ENA]
¡û
>W1920000142
FOIC01000009
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
54264
54336
+
Pro
CGG
[ENA]
¡û
>W1920000599
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
934171
934243
+
Pro
CGG
[ENA]
¡û
>W1920001054
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
2206592
2206665
+
Pro
CGG
[ENA]
¡û
>W1920001073
QXIJ01000002
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
133937
134010
+
Pro
CGG
[ENA]
¡û
>W1910226688
FMZP01000007
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
78858
78930
+
Pro
CGG
[ENA]
¡û
>W1910226911
FNFE01000002
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
614708
614780
+
Pro
CGG
[ENA]
¡û
>W1910227135
FNLC01000001
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
359938
359865
-
Pro
CGG
[ENA]
¡û
>W1910230232
FOKW01000001
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
405777
405850
+
Pro
CGG
[ENA]
¡û
>W1910230368
FOOQ01000002
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
761029
760956
-
Pro
CGG
[ENA]
¡û
>W1910230452
FORO01000020
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
53122
53194
+
Pro
CGG
[ENA]
¡û
>W1910230705
FOYS01000003
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
177161
177233
+
Pro
CGG
[ENA]
¡û
>W1910230759
FOYT01000002
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
883032
882960
-
Pro
CGG
[ENA]
¡û
>W1910230776
FOZK01000001
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
796528
796601
+
Pro
CGG
[ENA]
¡û
>W1910646137
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
2568107
2568034
-
Pro
CGG
[ENA]
¡û
>W1911433986
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
3755007
3754934
-
Pro
CGG
[ENA]
¡û
>W1911572243
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
819714
819641
-
Pro
CGG
[ENA]
¡û
>W1911591340
PKKI01000030
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
53039
53111
+
Pro
CGG
[ENA]
¡û
>W1911709648
QPLR01000003
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
142747
142820
+
Pro
CGG
[ENA]
¡û
>W1911709879
QPMJ01000002
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
952364
952291
-
Pro
CGG
[ENA]
¡û
>W1911717785
QQRR01000002
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
365815
365888
+
Pro
CGG
[ENA]
¡û
>W1911717994
QQTY01000002
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
206651
206578
-
Pro
CGG
[ENA]
¡û
>W1610004050
AGFZ01000030
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
22285
22357
+
Pseudo
CGG
[ENA]
¡û
>W1610004115
AGIM01000016
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
53567
53639
+
Pseudo
CGG
[ENA]
¡û
>W1610011906
AOHW01000022
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
166514
166439
-
Pseudo
CGG
[ENA]
¡û
>W1610011959
AOHX01000039
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
89259
89331
+
Pseudo
CGG
[ENA]
¡û
>W1610012005
AOHY01000034
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
124239
124166
-
Pseudo
CGG
[ENA]
¡û
>W1610012026
AOHZ01000031
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
1400
1473
+
Pseudo
CGG
[ENA]
¡û
>W1610012191
AOIC01000128
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
27393
27321
-
Pseudo
CGG
[ENA]
¡û
>W1610012534
AOIN01000098
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
58464
58391
-
Pseudo
CGG
[ENA]
¡û
>W1610012742
AOIS01000060
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
31142
31069
-
Pseudo
CGG
[ENA]
¡û
>W1610012762
AOIT01000016
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
21893
21965
+
Pseudo
CGG
[ENA]
¡û
>W1610012854
AOIV01000007
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
23152
23225
+
Pseudo
CGG
[ENA]
¡û
>W1610014430
AOLZ01000043
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
96794
96866
+
Pseudo
CGG
[ENA]
¡û
>W1610014462
AOMA01000073
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
7872
7945
+
Pseudo
CGG
[ENA]
¡û
>W1610019006
ARPH01000002
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
666916
666991
+
Pseudo
CGG
[ENA]
¡û
>W1610046841
BBCV01000012
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
46416
46488
+
Pseudo
CGG
[ENA]
¡û
>W1610082987
CBMA010000026
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
58932
58860
-
Pseudo
CGG
[ENA]
¡û
>W1610083036
CBMB010000009
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
58909
58982
+
Pseudo
CGG
[ENA]
¡û
>W1610682195
LKMM01000064
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
7206
7278
+
Pseudo
CGG
[ENA]
¡û
>W1610682533
LKNC01000017
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
7280
7207
-
Pseudo
CGG
[ENA]
¡û
>W1610799802
LOPU01000029
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
384977
385050
+
Pseudo
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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