This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455594 (31 seq.)
>A171000770
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
989919
989991
+
Pro
TGG
-
¡û
>A171001298
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
2243502
2243574
+
Pro
TGG
-
¡û
>A171002479
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
928910
928838
-
Pro
TGG
-
¡û
>A171003113
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1731740
1731668
-
Pro
TGG
-
¡û
>A171006908
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
711055
711127
+
Pro
TGG
-
¡û
>WENV170659934
JXWS01044956
[JXWS] soil metagenome; rice field; elevated CO2
146
218
+
Pro
TGG
[ENA]
¢þ
>WENV170680074
LFCJ01003637
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
10211
10283
+
Pro
TGG
[ENA]
¢þ
>WENV170703656
LKMJ01015033
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6189
6261
+
Pro
TGG
[ENA]
¢þ
>W1910227152
FNLC01000003
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
74214
74286
+
Pro
TGG
[ENA]
¡û
>W1910230248
FOKW01000006
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
301553
301481
-
Pro
TGG
[ENA]
¡û
>W1910230430
FORO01000003
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
107814
107742
-
Pro
TGG
[ENA]
¡û
>W1910230501
FOTC01000003
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
284468
284396
-
Pro
TGG
[ENA]
¡û
>W1910657564
MASN01000030
Euryarchaeota
Natrialba sp. SSL1 [MASN]
417169
417097
-
Pro
TGG
[ENA]
¡û
>W1910826110
MWPH01000003
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
57956
58028
+
Pro
TGG
[ENA]
¡û
>W1911591316
PKKI01000004
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
35574
35646
+
Pro
TGG
[ENA]
¡û
>W1610000808
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
2736774
2736702
-
Pro
TGG
[ENA]
¡û
>W1610001031
ACIT01000001
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
376294
376366
+
Pro
TGG
[ENA]
¡û
>W1610004038
AGFZ01000016
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
33619
33547
-
Pro
TGG
[ENA]
¡û
>W1610004090
AGIM01000005
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
42960
43032
+
Pro
TGG
[ENA]
¡û
>W1610005885
ALJD01000004
Euryarchaeota
Halogranum salarium B-1 [ALJD]
261366
261294
-
Pro
TGG
[ENA]
¡û
>W1610011725
AOHS01000033
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
2074
2002
-
Pro
TGG
[ENA]
¡û
>W1610012165
AOIC01000058
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
42446
42518
+
Pro
TGG
[ENA]
¡û
>W1610012443
AOIL01000051
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
709
781
+
Pro
TGG
[ENA]
¡û
>W1610012475
AOIM01000035
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
149397
149469
+
Pro
TGG
[ENA]
¡û
>W1610012501
AOIN01000008
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
182893
182821
-
Pro
TGG
[ENA]
¡û
>W1610012576
AOIO01000039
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
85097
85169
+
Pro
TGG
[ENA]
¡û
>W1610012602
AOIP01000016
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
199551
199623
+
Pro
TGG
[ENA]
¡û
>W1610014421
AOLZ01000030
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
30319
30391
+
Pro
TGG
[ENA]
¡û
>W1610018974
AQZY01000005
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
127729
127801
+
Pro
TGG
[ENA]
¡û
>W1610046872
BBCV01000091
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
536
464
-
Pro
TGG
[ENA]
¡û
>W1610671392
LKCV01000317
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
833
761
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK