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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45571 (30 seq.)
>W1711136337
LVAC01000012
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
118629
118716
+
Ser
GGA
[ENA]
¡û
>W1711223305
LXSU01000085
Campylobacterota
Campylobacter ornithocola WBE38 [LXSU]
153147
153234
+
Ser
GGA
[ENA]
¡û
>W1711476654
MJVW01000003
Campylobacterota
Campylobacter lari [MJVW]
138790
138877
+
Ser
GGA
[ENA]
¡û
>W1711477289
MJWK01000008
Campylobacterota
Campylobacter lari [MJWK]
6247
6160
-
Ser
GGA
[ENA]
¡û
>W1712043051
NFMK01000006
Campylobacterota
Campylobacter jejuni [NFMK]
241686
241773
+
Ser
GGA
[ENA]
¡û
>W1712043122
NFMM01000016
Campylobacterota
Campylobacter jejuni [NFMM]
5982
5895
-
Ser
GGA
[ENA]
¡û
>W1712043790
NFNE01000005
Campylobacterota
Campylobacter jejuni [NFNE]
1510462
1510549
+
Ser
GGA
[ENA]
¡û
>W1712044746
NFOE01000105
Campylobacterota
Campylobacter jejuni [NFOE]
46276
46363
+
Ser
GGA
[ENA]
¡û
>WENV181225643
OFDI01021310
[OFDI] metagenome; hydrothermal vent
328
415
+
Ser
GGA
[ENA]
¢þ
>WENV181412634
OGCK01003230
[OGCK] hot springs metagenome; hot spring sediment
274
187
-
Ser
GGA
[ENA]
¢þ
>WENV183515395
OMKS01060899
[OMKS] sediment metagenome; hot spring sediment
306
393
+
Ser
GGA
[ENA]
¢þ
>W09110085
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
726699
726786
+
Ser
GGA
[ENA]
¡û
>C191213190
LR134508
Campylobacterota
Campylobacter lari NCTC11937 [LR134508]
127986
128073
+
Ser
GGA
-
¡û
>C191214506
LR134534
Campylobacterota
Campylobacter insulaenigrae NCTC12928 [LR134534]
276140
276227
+
Ser
GGA
-
¡û
>W141814450
JQGK01000013
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
38592
38679
+
Ser
GGA
[ENA]
¡û
>W1911200182
NREN01000010
Campylobacterota
Campylobacter sp. P255 [NREN]
62764
62851
+
Ser
GGA
[ENA]
¡û
>C151034002
CP007766
Campylobacterota
Campylobacter peloridis LMG 23910 [CP007766]
114281
114368
+
Ser
GGA
[Ensembl]
¡û
>C151034094
CP007770
Campylobacterota
Campylobacter insulaenigrae NCTC 12927 [CP007770]
104117
104204
+
Ser
GGA
[Ensembl]
¡û
>C151034136
CP007771
Campylobacterota
Campylobacter lari subsp. concheus LMG 11760 [CP007771]
110018
110105
+
Ser
GGA
[Ensembl]
¡û
>C151034179
CP007772
Campylobacterota
Campylobacter subantarcticus LMG 24374 [CP007772]
124986
125073
+
Ser
GGA
[Ensembl]
¡û
>C151034314
CP007775
Campylobacterota
Campylobacter lari NCTC 11845 [CP007775]
130480
130567
+
Ser
GGA
[Ensembl]
¡û
>C151034360
CP007776
Campylobacterota
Campylobacter lari CCUG 22395 [CP007776]
112069
112156
+
Ser
GGA
[Ensembl]
¡û
>C151034406
CP007777
Campylobacterota
Campylobacter lari RM16701 [CP007777]
120730
120817
+
Ser
GGA
[Ensembl]
¡û
>C151034449
CP007778
Campylobacterota
Campylobacter lari RM16712 [CP007778]
125652
125739
+
Ser
GGA
[Ensembl]
¡û
>C151081711
CP011372
Campylobacterota
Campylobacter lari Slaughter Beach [CP011372]
113060
113147
+
Ser
GGA
[Ensembl]
¡û
>W1510014735
BBQE01000007
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
114442
114355
-
Ser
GGA
[ENA]
¡û
>W1511327848
JQIQ01000016
Campylobacterota
Sulfurovum sp. PC08-66 [JQIQ]
61665
61752
+
Ser
GGA
[ENA]
¡û
>C121011194
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
18355
18268
-
Ser
GGA
[Ensembl]
¡û
>W1610947457
LVAC01000012
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
118629
118716
+
Ser
GGA
[ENA]
¡û
>W1710553068
FOHH01000003
Campylobacterota
Campylobacter lari subsp. lari [FOHH]
6503
6416
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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