This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455821 (121 seq.)
>W1710785366
LJHU01000056
Alphaproteobacteria
Brevundimonas sp. AAP58 (LJHU)
56035
56110
+
Lys
CTT
[ENA]
¡û
>W1710860587
LMCZ01000041
Alphaproteobacteria
Rhizobium sp. Root1204 (LMCZ)
65996
66071
+
Lys
CTT
[ENA]
¡û
>W1710862014
LMEB01000010
Alphaproteobacteria
Brevundimonas sp. Root1279 (LMEB)
167661
167736
+
Lys
CTT
[ENA]
¡û
>W1710863248
LMEY01000023
Alphaproteobacteria
Rhizobium sp. Root1334 (LMEY)
569101
569176
+
Lys
CTT
[ENA]
¡û
>W1710863380
LMFB01000038
Alphaproteobacteria
Rhizobium sp. Root483D2 (LMFB)
131501
131426
-
Lys
CTT
[ENA]
¡û
>W1710863884
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 (LMFL)
538192
538267
+
Lys
CTT
[ENA]
¡û
>W1710863895
LMFL01000067
Alphaproteobacteria
Brevundimonas sp. Root1423 (LMFL)
14862
14787
-
Lys
CTT
[ENA]
¡û
>W1710865551
LMGT01000006
Alphaproteobacteria
Brevundimonas sp. Root608 (LMGT)
107829
107904
+
Lys
CTT
[ENA]
¡û
>W1710867383
LMIF01000023
Alphaproteobacteria
Rhizobium sp. Root73 (LMIF)
570204
570279
+
Lys
CTT
[ENA]
¡û
>W1710873858
LMNC01000009
Alphaproteobacteria
Brevundimonas sp. Leaf280 (LMNC)
83406
83331
-
Lys
CTT
[ENA]
¡û
>W1710876123
LMOY01000012
Alphaproteobacteria
Brevundimonas sp. Leaf168 (LMOY)
7861
7786
-
Lys
CTT
[ENA]
¡û
>W1710876396
LMPE01000015
Alphaproteobacteria
Rhizobium sp. Leaf341 (LMPE)
378009
377934
-
Lys
CTT
[ENA]
¡û
>W1710876397
LMPE01000015
Alphaproteobacteria
Rhizobium sp. Leaf341 (LMPE)
363969
363894
-
Lys
CTT
[ENA]
¡û
>W1710877318
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 (LMPZ)
128388
128463
+
Lys
CTT
[ENA]
¡û
>W1710877377
LMQB01000001
Alphaproteobacteria
Rhizobium sp. Leaf371 (LMQB)
646850
646925
+
Lys
CTT
[ENA]
¡û
>W1710877378
LMQB01000001
Alphaproteobacteria
Rhizobium sp. Leaf371 (LMQB)
661480
661555
+
Lys
CTT
[ENA]
¡û
>W1710877487
LMQD01000012
Alphaproteobacteria
Rhizobium sp. Leaf383 (LMQD)
567621
567546
-
Lys
CTT
[ENA]
¡û
>W1710877488
LMQD01000012
Alphaproteobacteria
Rhizobium sp. Leaf383 (LMQD)
553581
553506
-
Lys
CTT
[ENA]
¡û
>W1710877550
LMQE01000005
Alphaproteobacteria
Rhizobium sp. Leaf384 (LMQE)
942535
942460
-
Lys
CTT
[ENA]
¡û
>W1710877551
LMQE01000005
Alphaproteobacteria
Rhizobium sp. Leaf384 (LMQE)
928495
928420
-
Lys
CTT
[ENA]
¡û
>W1710883212
LMVL01000016
Alphaproteobacteria
Agrobacterium vitis (LMVL)
26376
26451
+
Lys
CTT
[ENA]
¡û
>W1711081100
LSRO01000119
Alphaproteobacteria
Rhizobium sp. 58 (LSRO)
73814
73739
-
Lys
CTT
[ENA]
¡û
>W1711081131
LSRP01000076
Alphaproteobacteria
Rhizobium sp. 59 (LSRP)
74140
74065
-
Lys
CTT
[ENA]
¡û
>W1711315226
MAVS01000066
Alphaproteobacteria
Agrobacterium vitis (MAVS)
26368
26443
+
Lys
CTT
[ENA]
¡û
>W1711325909
MBEV01000013
Alphaproteobacteria
Agrobacterium vitis (MBEV)
631623
631548
-
Lys
CTT
[ENA]
¡û
>W1711325958
MBEX01000061
Alphaproteobacteria
Agrobacterium vitis (MBEX)
73256
73181
-
Lys
CTT
[ENA]
¡û
>W1711326025
MBEY01000030
Alphaproteobacteria
Agrobacterium vitis (MBEY)
631623
631548
-
Lys
CTT
[ENA]
¡û
>W1711326083
MBFA01000004
Alphaproteobacteria
Agrobacterium vitis (MBFA)
223428
223503
+
Lys
CTT
[ENA]
¡û
>W1711326179
MBFB01000069
Alphaproteobacteria
Agrobacterium vitis (MBFB)
139414
139489
+
Lys
CTT
[ENA]
¡û
>W1711326182
MBFC01000003
Alphaproteobacteria
Agrobacterium vitis (MBFC)
18750
18675
-
Lys
CTT
[ENA]
¡û
>W1711326276
MBFE01000003
Alphaproteobacteria
Agrobacterium vitis (MBFE)
223429
223504
+
Lys
CTT
[ENA]
¡û
>W1711489051
MKIM01000027
Alphaproteobacteria
Rhizobium oryziradicis (MKIM)
720412
720487
+
Lys
CTT
[ENA]
¡û
>W1711489052
MKIM01000027
Alphaproteobacteria
Rhizobium oryziradicis (MKIM)
720501
720576
+
Lys
CTT
[ENA]
¡û
>W1711959660
NBZE01000011
Alphaproteobacteria
Agrobacterium vitis (NBZE)
29184
29109
-
Lys
CTT
[ENA]
¡û
>W131052437
AMYY01000025
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
34200
34275
+
Lys
CTT
[ENA]
¡û
>W131218126
ATXK01000001
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
6536
6461
-
Lys
CTT
[ENA]
¡û
>W131237242
AUNP01000224
Alphaproteobacteria
Rhizobiales bacterium JGI 0001002-O7 [AUNP]
3462
3537
+
Lys
CTT
[ENA]
¡û
>w015760
AAPJ01000003
Alphaproteobacteria
Aurantimonas sp. SI85-9A1 [AAPJ]
82278
82355
+
Lys
CTT
[ENA]
¡û
>WENV180364164
OBNZ01115793
[OBNZ] marine metagenome; ENVO:00002010
60
135
+
Lys
CTT
[ENA]
¢þ
>WENV181384461
OFRI01001253
[OFRI] wastewater metagenome; Exp Tend VB 90WW
5504
5579
+
Lys
CTT
[ENA]
¢þ
>W08010841
ABRU01000043
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
100474
100549
+
Lys
CTT
[ENA]
¡û
>WENV170192893
CEPG01027846
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4087
4012
-
Lys
CTT
[ENA]
¢þ
>WENV170200861
CEPP01001621
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
57858
57933
+
Lys
CTT
[ENA]
¢þ
>WENV170672679
LAZR01000823
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
21166
21241
+
Lys
CTT
[ENA]
¢þ
>WENV170680999
LFEF01041166
[LFEF] freshwater metagenome; waterbloom
638
713
+
Lys
CTT
[ENA]
¢þ
>WENV170710419
LNFM01001715
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
42875
42800
-
Lys
CTT
[ENA]
¢þ
>WENV170713467
LNFM01032370
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1351
1276
-
Lys
CTT
[ENA]
¢þ
>C181056249
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 (CP022048)
3121363
3121288
-
Lys
CTT
-
¡û
>C191159619
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B (CP038440)
1905008
1905083
+
Lys
CTT
-
¡û
>W141712430
JMQR01000009
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
11663
11588
-
Lys
CTT
[ENA]
¡û
>W141731245
JNIX01000015
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
2684
2609
-
Lys
CTT
[ENA]
¡û
>W141816018
JQJO01000003
Alphaproteobacteria
Rhizobium sp. OK665 [JQJO]
399100
399025
-
Lys
CTT
[ENA]
¡û
>W141819260
JQME01000002
Alphaproteobacteria
Rhizobium sp. CF258 [JQME]
361642
361717
+
Lys
CTT
[ENA]
¡û
>W141821310
JQNM01000005
Alphaproteobacteria
Rhizobium sp. YR295 [JQNM]
327774
327849
+
Lys
CTT
[ENA]
¡û
>C09100960
CP000633
Alphaproteobacteria
Agrobacterium vitis S4
2309951
2309876
-
Lys
CTT
[Ensembl]
¡û
>W1910725228
MGLJ01000397
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 (MGLJ)
3972
3897
-
Lys
CTT
[ENA]
¡û
>W1910725273
MGLK01000037
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 (MGLK)
26234
26309
+
Lys
CTT
[ENA]
¡û
>W1910725293
MGLL01000178
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 (MGLL)
1969
2044
+
Lys
CTT
[ENA]
¡û
>W1911737872
QTTA01000023
Alphaproteobacteria
Brevundimonas halotolerans MCS24 (QTTA)
105206
105131
-
Lys
CTT
[ENA]
¡û
>W1911738158
QUOQ01000004
Alphaproteobacteria
Brevundimonas sp. NS26 (QUOQ)
373853
373778
-
Lys
CTT
[ENA]
¡û
>W1810671302
QJSR01000002
Alphaproteobacteria
Rhizobium sp. PP-CC-3A-592 (QJSR)
641672
641747
+
Lys
CTT
[ENA]
¡û
>W1810671303
QJSR01000002
Alphaproteobacteria
Rhizobium sp. PP-CC-3A-592 (QJSR)
664176
664251
+
Lys
CTT
[ENA]
¡û
>W1810671324
QJSS01000001
Alphaproteobacteria
Rhizobium sp. PP-WC-1G-195 (QJSS)
611764
611689
-
Lys
CTT
[ENA]
¡û
>W1810671325
QJSS01000001
Alphaproteobacteria
Rhizobium sp. PP-WC-1G-195 (QJSS)
589194
589119
-
Lys
CTT
[ENA]
¡û
>W1810671476
QJSV01000002
Alphaproteobacteria
Rhizobium sp. PP-F2F-G20b (QJSV)
383173
383098
-
Lys
CTT
[ENA]
¡û
>W1810671477
QJSV01000002
Alphaproteobacteria
Rhizobium sp. PP-F2F-G20b (QJSV)
360519
360444
-
Lys
CTT
[ENA]
¡û
>W1810672247
QJTH01000001
Alphaproteobacteria
Rhizobium sp. PP-F2F-G38 (QJTH)
611652
611577
-
Lys
CTT
[ENA]
¡û
>W1810672248
QJTH01000001
Alphaproteobacteria
Rhizobium sp. PP-F2F-G38 (QJTH)
589082
589007
-
Lys
CTT
[ENA]
¡û
>W1810889055
QURL01000001
Alphaproteobacteria
Fulvimarina sp. 85 (QURL)
432031
431956
-
Lys
CTT
[ENA]
¡û
>SRA1015465
SRR023846.70180
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
69
144
+
Lys
CTT
[SRA]
>W10109840
ADBM01000002
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
144601
144676
+
Lys
CTT
[ENA]
¡û
>C10102207
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264
2477199
2477274
+
Lys
CTT
[Ensembl]
¡û
>W11112277
ADBM01000002
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
144601
144676
+
Lys
CTT
[ENA]
¡û
>W1511433493
JUHG01000011
Alphaproteobacteria
Agrobacterium rhizogenes OV677 [JUHG]
674876
674801
-
Lys
CTT
[ENA]
¡û
>W1511433494
JUHG01000011
Alphaproteobacteria
Agrobacterium rhizogenes OV677 [JUHG]
674594
674519
-
Lys
CTT
[ENA]
¡û
>C161089100
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2
1337458
1337533
+
Lys
CTT
[Ensembl]
¡û
>W121044108
AHZC01000066
Alphaproteobacteria
Rhizobium sp. PDO1-076 [AHZC]
10532
10457
-
Lys
CTT
[ENA]
¡û
>W1610056476
BBWH01000043
Alphaproteobacteria
Aureimonas sp. AU12 (BBWH)
30708
30783
+
Lys
CTT
[ENA]
¡û
>W1610056599
BBWK01000002
Alphaproteobacteria
Aureimonas sp. AU4 (BBWK)
75794
75719
-
Lys
CTT
[ENA]
¡û
>W1610056780
BBWN01000029
Alphaproteobacteria
Aurantimonas coralicida (BBWN)
83991
84066
+
Lys
CTT
[ENA]
¡û
>W1610056881
BBWP01000056
Alphaproteobacteria
Aurantimonas manganoxydans (BBWP)
2636
2711
+
Lys
CTT
[ENA]
¡û
>W1610074216
BCWM01000006
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 (BCWM)
33748
33823
+
Lys
CTT
[ENA]
¡û
>W1610436534
FJUR01000001
Alphaproteobacteria
Rhizobium sp. 9140 (FJUR)
2770579
2770504
-
Lys
CTT
[ENA]
¡û
>W1610436535
FJUR01000001
Alphaproteobacteria
Rhizobium sp. 9140 (FJUR)
2750528
2750453
-
Lys
CTT
[ENA]
¡û
>W1610616445
LGLV01000012
Alphaproteobacteria
Pararhizobium polonicum (LGLV)
182536
182461
-
Lys
CTT
[ENA]
¡û
>W1610649172
LJHU01000056
Alphaproteobacteria
Brevundimonas sp. AAP58 (LJHU)
56035
56110
+
Lys
CTT
[ENA]
¡û
>W1610722933
LMCZ01000041
Alphaproteobacteria
Rhizobium sp. Root1204 (LMCZ)
65996
66071
+
Lys
CTT
[ENA]
¡û
>W1610724360
LMEB01000010
Alphaproteobacteria
Brevundimonas sp. Root1279 (LMEB)
167661
167736
+
Lys
CTT
[ENA]
¡û
>W1610725594
LMEY01000023
Alphaproteobacteria
Rhizobium sp. Root1334 (LMEY)
569101
569176
+
Lys
CTT
[ENA]
¡û
>W1610725726
LMFB01000038
Alphaproteobacteria
Rhizobium sp. Root483D2 (LMFB)
131501
131426
-
Lys
CTT
[ENA]
¡û
>W1610726230
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 (LMFL)
538192
538267
+
Lys
CTT
[ENA]
¡û
>W1610726241
LMFL01000067
Alphaproteobacteria
Brevundimonas sp. Root1423 (LMFL)
14862
14787
-
Lys
CTT
[ENA]
¡û
>W1610727897
LMGT01000006
Alphaproteobacteria
Brevundimonas sp. Root608 (LMGT)
107829
107904
+
Lys
CTT
[ENA]
¡û
>W1610729729
LMIF01000023
Alphaproteobacteria
Rhizobium sp. Root73 (LMIF)
570204
570279
+
Lys
CTT
[ENA]
¡û
>W1610736204
LMNC01000009
Alphaproteobacteria
Brevundimonas sp. Leaf280 (LMNC)
83406
83331
-
Lys
CTT
[ENA]
¡û
>W1610738469
LMOY01000012
Alphaproteobacteria
Brevundimonas sp. Leaf168 (LMOY)
7861
7786
-
Lys
CTT
[ENA]
¡û
>W1610738742
LMPE01000015
Alphaproteobacteria
Rhizobium sp. Leaf341 (LMPE)
378009
377934
-
Lys
CTT
[ENA]
¡û
>W1610738743
LMPE01000015
Alphaproteobacteria
Rhizobium sp. Leaf341 (LMPE)
363969
363894
-
Lys
CTT
[ENA]
¡û
>W1610739664
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 (LMPZ)
128388
128463
+
Lys
CTT
[ENA]
¡û
>W1610739723
LMQB01000001
Alphaproteobacteria
Rhizobium sp. Leaf371 (LMQB)
646850
646925
+
Lys
CTT
[ENA]
¡û
>W1610739724
LMQB01000001
Alphaproteobacteria
Rhizobium sp. Leaf371 (LMQB)
661480
661555
+
Lys
CTT
[ENA]
¡û
>W1610739833
LMQD01000012
Alphaproteobacteria
Rhizobium sp. Leaf383 (LMQD)
567621
567546
-
Lys
CTT
[ENA]
¡û
>W1610739834
LMQD01000012
Alphaproteobacteria
Rhizobium sp. Leaf383 (LMQD)
553581
553506
-
Lys
CTT
[ENA]
¡û
>W1610739896
LMQE01000005
Alphaproteobacteria
Rhizobium sp. Leaf384 (LMQE)
942535
942460
-
Lys
CTT
[ENA]
¡û
>W1610739897
LMQE01000005
Alphaproteobacteria
Rhizobium sp. Leaf384 (LMQE)
928495
928420
-
Lys
CTT
[ENA]
¡û
>W1610745138
LMVL01000016
Alphaproteobacteria
Agrobacterium vitis (LMVL)
26376
26451
+
Lys
CTT
[ENA]
¡û
>W1710053175
BBWH01000043
Alphaproteobacteria
Aureimonas sp. AU12 (BBWH)
30708
30783
+
Lys
CTT
[ENA]
¡û
>W1710053298
BBWK01000002
Alphaproteobacteria
Aureimonas sp. AU4 (BBWK)
75794
75719
-
Lys
CTT
[ENA]
¡û
>W1710053479
BBWN01000029
Alphaproteobacteria
Aurantimonas coralicida (BBWN)
83991
84066
+
Lys
CTT
[ENA]
¡û
>W1710053580
BBWP01000056
Alphaproteobacteria
Aurantimonas manganoxydans (BBWP)
2636
2711
+
Lys
CTT
[ENA]
¡û
>W1710071334
BCWM01000006
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 (BCWM)
33748
33823
+
Lys
CTT
[ENA]
¡û
>W1710436270
FJUR01000001
Alphaproteobacteria
Rhizobium sp. 9140 (FJUR)
2770579
2770504
-
Lys
CTT
[ENA]
¡û
>W1710436271
FJUR01000001
Alphaproteobacteria
Rhizobium sp. 9140 (FJUR)
2750528
2750453
-
Lys
CTT
[ENA]
¡û
>W1710524465
FNIT01000003
Alphaproteobacteria
Aureimonas jatrophae (FNIT)
324904
324979
+
Lys
CTT
[ENA]
¡û
>W1710527018
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 (FNKT)
670262
670337
+
Lys
CTT
[ENA]
¡û
>W1710528168
FNMZ01000004
Alphaproteobacteria
Albimonas donghaensis (FNMZ)
128835
128910
+
Lys
CTT
[ENA]
¡û
>W1710552179
FOGR01000001
Alphaproteobacteria
Rhizobium sp. NFR03 (FOGR)
379736
379661
-
Lys
CTT
[ENA]
¡û
>W1710552180
FOGR01000001
Alphaproteobacteria
Rhizobium sp. NFR03 (FOGR)
364046
363971
-
Lys
CTT
[ENA]
¡û
>W1710576199
FOZV01000009
Alphaproteobacteria
Brevundimonas viscosa (FOZV)
55736
55811
+
Lys
CTT
[ENA]
¡û
>W1710606289
FWXR01000013
Alphaproteobacteria
Fulvimarina manganoxydans (FWXR)
51030
50955
-
Lys
CTT
[ENA]
¡û
>W1710737691
LGLV01000012
Alphaproteobacteria
Pararhizobium polonicum (LGLV)
182536
182461
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK