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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455921 (43 seq.)
>W1711081635
LSSV01000033
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
37707
37634
-
Gly
GCC
[ENA]
¡û
>W1711082293
LSTT01000124
Actinomycetota
Dietzia cinnamea [LSTT]
29778
29705
-
Gly
GCC
[ENA]
¡û
>W1711139750
LVFF01000047
Actinomycetota
Dietzia maris [LVFF]
241169
241242
+
Gly
GCC
[ENA]
¡û
>W1711187596
LWPP01000382
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
6196
6269
+
Gly
GCC
[ENA]
¡û
>W1711351213
MDCG01000034
Actinomycetota
Dietzia alimentaria [MDCG]
1513
1440
-
Gly
GCC
[ENA]
¡û
>WENV011244
AACY020306552
Marine microbial communities from Global Ocean Sampling (GOS)
1632
1557
-
Gly
GCC
[ENA]
>W131159255
AQUX01000001
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
589231
589156
-
Gly
GCC
[ENA]
¡û
>W131159296
AQUX01000029
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
201
128
-
Gly
GCC
[ENA]
¡û
>W131227722
AUFJ01000010
Actinomycetota
Brevibacterium album DSM 18261 [AUFJ]
73422
73349
-
Gly
GCC
[ENA]
¡û
>W131227729
AUFJ01000011
Actinomycetota
Brevibacterium album DSM 18261 [AUFJ]
286442
286515
+
Gly
GCC
[ENA]
¡û
>W131240845
BAOP01000010
Actinomycetota
Gordonia malaquae NBRC 108250 [BAOP]
169392
169465
+
Gly
GCC
[ENA]
¡û
>W131240848
BAOP01000010
Actinomycetota
Gordonia malaquae NBRC 108250 [BAOP]
169718
169791
+
Gly
GCC
[ENA]
¡û
>W131240849
BAOP01000010
Actinomycetota
Gordonia malaquae NBRC 108250 [BAOP]
170185
170258
+
Gly
GCC
[ENA]
¡û
>WENV180099923
OANK01003950
[OANK] marine metagenome; ENVO:00002010
232
305
+
Gly
GCC
[ENA]
¢þ
>WENV180101115
OAOU01000734
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
4669
4596
-
Gly
GCC
[ENA]
¢þ
>WENV180585382
OCOL01003950
[OCOL] marine metagenome; ENVO:00002010
232
305
+
Gly
GCC
[ENA]
¢þ
>WENV019072
AACY020525377
Marine microbial communities from Global Ocean Sampling (GOS)
52
127
+
Gly
GCC
[ENA]
>C181017354
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
2796391
2796464
+
Gly
GCC
-
¡û
>C181148300
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
510124
510197
+
Gly
GCC
-
¡û
>WENV022280
AACY020636835
Marine microbial communities from Global Ocean Sampling (GOS)
425
350
-
Gly
GCC
[ENA]
>W1910438316
FWCI01000015
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
94798
94871
+
Gly
GCC
[ENA]
¡û
>W1910438318
FWCI01000015
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
95015
95088
+
Gly
GCC
[ENA]
¡û
>W1910438321
FWCI01000015
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
95318
95391
+
Gly
GCC
[ENA]
¡û
>W1911422544
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
3314233
3314160
-
Gly
GCC
[ENA]
¡û
>W1810722012
QNTT01000028
Actinomycetota
Dietzia maris SST1 [QNTT]
15351
15424
+
Gly
GCC
[ENA]
¡û
>C151012231
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
1643601
1643674
+
Gly
GCC
[Ensembl]
¡û
>C151012233
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
1643801
1643874
+
Gly
GCC
[Ensembl]
¡û
>C151012236
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
1644125
1644200
+
Gly
GCC
[Ensembl]
¡û
>W11139524
AEKG01000239
Actinomycetota
Dietzia cinnamea P4 [AEKG]
1458
1531
+
Gly
GCC
[ENA]
¡û
>W1610069400
BCSL01000019
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
18808
18735
-
Gly
GCC
[ENA]
¡û
>W1610069916
BCSW01000026
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
12383
12456
+
Gly
GCC
[ENA]
¡û
>WENV070476
AACY023810339
Marine microbial communities from Global Ocean Sampling (GOS)
87
12
-
Gly
GCC
[ENA]
>WENV070609
AACY023816315
Marine microbial communities from Global Ocean Sampling (GOS)
115
190
+
Gly
GCC
[ENA]
>WENV071106
AACY023835375
Marine microbial communities from Global Ocean Sampling (GOS)
1423
1348
-
Gly
GCC
[ENA]
>WENV074159
AACY023960239
Marine microbial communities from Global Ocean Sampling (GOS)
537
462
-
Gly
GCC
[ENA]
>W1610920470
LSSV01000033
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
37707
37634
-
Gly
GCC
[ENA]
¡û
>W1610921078
LSTT01000124
Actinomycetota
Dietzia cinnamea [LSTT]
29778
29705
-
Gly
GCC
[ENA]
¡û
>W1610950758
LVFF01000047
Actinomycetota
Dietzia maris [LVFF]
241169
241242
+
Gly
GCC
[ENA]
¡û
>W1710066773
BCSL01000019
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
18808
18735
-
Gly
GCC
[ENA]
¡û
>W1710067289
BCSW01000026
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
12383
12456
+
Gly
GCC
[ENA]
¡û
>W1710534603
FNRZ01000003
Actinomycetota
Gordonia malaquae [FNRZ]
2049018
2048945
-
Gly
GCC
[ENA]
¡û
>W1710534606
FNRZ01000003
Actinomycetota
Gordonia malaquae [FNRZ]
2048692
2048619
-
Gly
GCC
[ENA]
¡û
>W1710534607
FNRZ01000003
Actinomycetota
Gordonia malaquae [FNRZ]
2048225
2048152
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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