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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455932 (54 seq.)
>W1711082085
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
4539811
4539736
-
Lys
TTT
[ENA]
¡û
>W131046030
AMSA01000014
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
29763
29688
-
Lys
TTT
[ENA]
¡û
>W131046087
AMSB01000028
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
30276
30201
-
Lys
TTT
[ENA]
¡û
>W131050809
AMXC01000003
Betaproteobacteria
Thauera sp. 63 [AMXC]
24908
24833
-
Lys
TTT
[ENA]
¡û
>W1711430710
MIJG01000005
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
758817
758742
-
Lys
TTT
[ENA]
¡û
>W1711765134
MUXB01000131
Betaproteobacteria
Herbaspirillum sp. VT-16-41 [MUXB]
22138
22063
-
Lys
TTT
[ENA]
¡û
>W1712077115
NGUQ01000015
Betaproteobacteria
Pandoraea sp. PE-S2T-3 [NGUQ]
387872
387947
+
Lys
TTT
[ENA]
¡û
>W1712077166
NGUR01000010
Betaproteobacteria
Pandoraea sp. PE-S2R-1 [NGUR]
463810
463885
+
Lys
TTT
[ENA]
¡û
>W1712110282
NJGU01000013
Betaproteobacteria
Herbaspirillum robiniae HZ10 [NJGU]
144528
144603
+
Lys
TTT
[ENA]
¡û
>W1712110339
NJGV01000029
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
25782
25707
-
Lys
TTT
[ENA]
¡û
>C171021247
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
1268539
1268464
-
Lys
TTT
-
¡û
>C171085357
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
2341253
2341328
+
Lys
TTT
-
¡û
>WENV180017512
FSXF01000087
[FSXF] metagenome; soil
357
282
-
Lys
TTT
[ENA]
¢þ
>WENV180018319
FSYV01000617
[FSYV] metagenome; soil
16945
17020
+
Lys
TTT
[ENA]
¢þ
>WENV180033127
FTKD01411775
[FTKD] metagenome; soil
25313
25388
+
Lys
TTT
[ENA]
¢þ
>WENV180036058
FTLB01202610
[FTLB] metagenome; soil
568
643
+
Lys
TTT
[ENA]
¢þ
>W141003833
AEEC02000027
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
23846
23771
-
Lys
TTT
[ENA]
¡û
>WENV181416324
OGCL01073569
[OGCL] hot springs metagenome; Hot spring water
350
275
-
Lys
TTT
[ENA]
¢þ
>WENV181416326
OGCL01073569
[OGCL] hot springs metagenome; Hot spring water
164
89
-
Lys
TTT
[ENA]
¢þ
>W141258908
CBXX010000017
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
35225
35150
-
Lys
TTT
[ENA]
¡û
>WENV183697922
OUNK010373155
[OUNK] metagenome; soil
2153
2228
+
Lys
TTT
[ENA]
¢þ
>WENV183735092
PJUA01000851
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
8586
8511
-
Lys
TTT
[ENA]
¢þ
>WENV183735818
PJUB01003852
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
1115
1190
+
Lys
TTT
[ENA]
¢þ
>WENV183736591
PJUC01018470
[PJUC] soil metagenome; Soil enriched on filter paper
424
349
-
Lys
TTT
[ENA]
¢þ
>WENV183741206
PJUF01056428
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
476
401
-
Lys
TTT
[ENA]
¢þ
>WENV183743654
PJUJ01014912
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
278
353
+
Lys
TTT
[ENA]
¢þ
>WENV183744289
PJUK01004834
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
555
630
+
Lys
TTT
[ENA]
¢þ
>WENV170565523
FJVX01000800
[FJVX] metagenome; soil
3206
3131
-
Lys
TTT
[ENA]
¢þ
>C181071841
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
4037490
4037565
+
Lys
TTT
-
¡û
>C181164181
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
3075753
3075828
+
Lys
TTT
-
¡û
>C191029378
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
1217527
1217452
-
Lys
TTT
-
¡û
>C191124274
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
1240724
1240649
-
Lys
TTT
-
¡û
>W1910577875
JUGD01000031
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
1120
1045
-
Lys
TTT
[ENA]
¡û
>W1910578322
JWJC01000030
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
371
296
-
Lys
TTT
[ENA]
¡û
>W1911114349
NOIH01000003
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
275345
275420
+
Lys
TTT
[ENA]
¡û
>W1911734492
QTQP01000024
Betaproteobacteria
Burkholderia sp. Bp8963 [QTQP]
113505
113430
-
Lys
TTT
[ENA]
¡û
>W1911802738
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
2540479
2540554
+
Lys
TTT
[ENA]
¡û
>W1810194073
PKOI01000039
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
3571
3496
-
Lys
TTT
[ENA]
¡û
>C151082369
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
4701939
4702014
+
Lys
TTT
-
¡û
>C151087610
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
1374363
1374288
-
Lys
TTT
[Ensembl]
¡û
>C10107843
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
1374645
1374570
-
Lys
TTT
[Ensembl]
¡û
>W1511683837
LFLT01000017
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
19059
18984
-
Lys
TTT
[ENA]
¡û
>W1511683892
LFLU01000018
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
83619
83694
+
Lys
TTT
[ENA]
¡û
>W1511686482
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
1167353
1167278
-
Lys
TTT
[ENA]
¡û
>C161056206
CP013480
Betaproteobacteria
Pandoraea norimbergensis DSM 11628 [CP013480]
5814192
5814267
+
Lys
TTT
-
¡û
>C161060483
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
1199018
1198943
-
Lys
TTT
[Ensembl]
¡û
>C161075108
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
3712607
3712532
-
Lys
TTT
[Ensembl]
¡û
>W1610070432
BCTG01000014
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
98931
99006
+
Lys
TTT
[ENA]
¡û
>W1610071861
BCUJ01000026
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
74905
74980
+
Lys
TTT
[ENA]
¡û
>W121068685
AJVC01000002
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
328302
328227
-
Lys
TTT
[ENA]
¡û
>W121085174
AKJA01000105
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
28991
29066
+
Lys
TTT
[ENA]
¡û
>W121086365
AKJW01000016
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
136021
136096
+
Lys
TTT
[ENA]
¡û
>W1710067805
BCTG01000014
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
98931
99006
+
Lys
TTT
[ENA]
¡û
>W1710069063
BCUJ01000026
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
74905
74980
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK