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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455936 (53 seq.)
>W1710860529
LMCY01000010
Betaproteobacteria
Massilia sp. Root335 [LMCY]
171
246
+
Trp
CCA
[ENA]
¡û
>W1710860661
LMDB01000008
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
179
254
+
Trp
CCA
[ENA]
¡û
>W1710863125
LMEW01000013
Betaproteobacteria
Massilia sp. Root133 [LMEW]
105746
105671
-
Trp
CCA
[ENA]
¡û
>W1710864590
LMFZ01000011
Betaproteobacteria
Duganella sp. Root1480D1 [LMFZ]
89174
89099
-
Trp
CCA
[ENA]
¡û
>W1710864679
LMGB01000011
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
19689
19764
+
Trp
CCA
[ENA]
¡û
>W1710867233
LMIC01000014
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
179
254
+
Trp
CCA
[ENA]
¡û
>W131046089
AMSB01000037
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
16812
16737
-
Trp
CCA
[ENA]
¡û
>W131062301
ANJR01000031
Betaproteobacteria
Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR]
105404
105329
-
Trp
CCA
[ENA]
¡û
>W131181065
ARNP01000126
Betaproteobacteria
Massilia niastensis DSM 21313 [ARNP]
201
276
+
Trp
CCA
[ENA]
¡û
>W131225167
AUDI01000028
Betaproteobacteria
Pseudoduganella violaceinigra DSM 15887 [AUDI]
41582
41507
-
Trp
CCA
[ENA]
¡û
>W1711430702
MIJG01000001
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
1052007
1051932
-
Trp
CCA
[ENA]
¡û
>W1711765105
MUXB01000082
Betaproteobacteria
Herbaspirillum sp. VT-16-41 [MUXB]
20012
19937
-
Trp
CCA
[ENA]
¡û
>W1712110341
NJGV01000038
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
17707
17632
-
Trp
CCA
[ENA]
¡û
>C171021197
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
116180
116255
+
Trp
CCA
-
¡û
>C171088485
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
4334649
4334724
+
Trp
CCA
-
¡û
>W141003849
AEEC02000057
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
20287
20212
-
Trp
CCA
[ENA]
¡û
>W141223409
BADF01000471
Betaproteobacteria
Herbaspirillum sp. B39 [BADF]
2817
2742
-
Trp
CCA
[ENA]
¡û
>W141223507
BADI01000795
Betaproteobacteria
Herbaspirillum sp. B65 [BADI]
20607
20532
-
Trp
CCA
[ENA]
¡û
>W141223541
BADJ01000932
Betaproteobacteria
Herbaspirillum sp. B501 [BADJ]
605
680
+
Trp
CCA
[ENA]
¡û
>WENV170201198
CEPQ01001992
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
16388
16313
-
Trp
CCA
[ENA]
¢þ
>WENV170961774
MLJW01001192
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
5746
5671
-
Trp
CCA
[ENA]
¢þ
>C181163948
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
6143989
6143914
-
Trp
CCA
-
¡û
>C181187745
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
5208606
5208681
+
Trp
CCA
-
¡û
>C191029328
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
130394
130469
+
Trp
CCA
-
¡û
>C191124225
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
116410
116485
+
Trp
CCA
-
¡û
>C191150814
CP036401
Betaproteobacteria
Pseudoduganella albidiflava DSM 17472 [CP036401]
6538238
6538163
-
Trp
CCA
-
¡û
>C191156613
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
150880
150955
+
Trp
CCA
-
¡û
>C191157306
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
4140125
4140200
+
Trp
CCA
-
¡û
>C191173970
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
5335345
5335420
+
Trp
CCA
-
¡û
>W1910577879
JUGD01000042
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
155
230
+
Trp
CCA
[ENA]
¡û
>W1910578325
JWJC01000039
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
16815
16740
-
Trp
CCA
[ENA]
¡û
>W1810194060
PKOI01000018
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
28288
28363
+
Trp
CCA
[ENA]
¡û
>W1810330157
PUIP01000024
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
86849
86774
-
Trp
CCA
[ENA]
¡û
>C151087560
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
111691
111766
+
Trp
CCA
[Ensembl]
¡û
>C151092631
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
4145886
4145811
-
Trp
CCA
-
¡û
>C10107796
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
111690
111765
+
Trp
CCA
[Ensembl]
¡û
>W1511310209
JPQD01000042
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
260
335
+
Trp
CCA
[ENA]
¡û
>W1511683796
LFLS01000055
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
76
151
+
Trp
CCA
[ENA]
¡û
>W1511683847
LFLT01000059
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
16252
16177
-
Trp
CCA
[ENA]
¡û
>C161060433
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
129086
129161
+
Trp
CCA
[Ensembl]
¡û
>W1610070453
BCTG01000054
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
92
167
+
Trp
CCA
[ENA]
¡û
>W1610071870
BCUJ01000050
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
74
149
+
Trp
CCA
[ENA]
¡û
>W121068734
AJVC01000006
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
492527
492602
+
Trp
CCA
[ENA]
¡û
>W1610722875
LMCY01000010
Betaproteobacteria
Massilia sp. Root335 [LMCY]
171
246
+
Trp
CCA
[ENA]
¡û
>W1610723007
LMDB01000008
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
179
254
+
Trp
CCA
[ENA]
¡û
>W1610725471
LMEW01000013
Betaproteobacteria
Massilia sp. Root133 [LMEW]
105746
105671
-
Trp
CCA
[ENA]
¡û
>W1610726936
LMFZ01000011
Betaproteobacteria
Duganella sp. Root1480D1 [LMFZ]
89174
89099
-
Trp
CCA
[ENA]
¡û
>W1610727025
LMGB01000011
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
19689
19764
+
Trp
CCA
[ENA]
¡û
>W1610729579
LMIC01000014
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
179
254
+
Trp
CCA
[ENA]
¡û
>W1710067826
BCTG01000054
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
92
167
+
Trp
CCA
[ENA]
¡û
>W1710069072
BCUJ01000050
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
74
149
+
Trp
CCA
[ENA]
¡û
>W1710512870
FMZS01000019
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
109737
109662
-
Trp
CCA
[ENA]
¡û
>W1710561502
FOOF01000003
Betaproteobacteria
Duganella sp. CF458 [FOOF]
140853
140778
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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