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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455995 (55 seq.)
>W1710889749
LNBC01000015
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
73397
73472
+
Trp
CCA
[ENA]
¡û
>W1711135067
LUYN01000014
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
19685
19610
-
Trp
CCA
[ENA]
¡û
>W1712104769
NIPZ01000088
Alphaproteobacteria
Paracoccus yeei [NIPZ]
59888
59963
+
Trp
CCA
[ENA]
¡û
>C171067783
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
2855884
2855809
-
Trp
CCA
-
¡û
>C171107687
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
1155238
1155163
-
Trp
CCA
-
¡û
>W131158894
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
1883049
1883124
+
Trp
CCA
[ENA]
¡û
>C016009
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
722941
723016
+
Trp
CCA
[Ensembl]
¡û
>WENV183733614
PJTY01006705
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1277
1202
-
Trp
CCA
[ENA]
¢þ
>WENV170228404
CEQG01008240
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6475
6400
-
Trp
CCA
[ENA]
¢þ
>WENV170564875
CZPY01000015
[CZPY] metagenome; PAHs-polluted Soil
73397
73472
+
Trp
CCA
[ENA]
¢þ
>WENV170606714
FUWD010716671
[FUWD] metagenome; unknown
26
101
+
Trp
CCA
[ENA]
¢þ
>PL191000038
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
722941
723016
+
Trp
CCA
[Ensembl]
¡û
>W09103075
AAIT01000032
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
7114
7039
-
Trp
CCA
[ENA]
¡û
>C181099803
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
669466
669391
-
Trp
CCA
-
¡û
>C181116766
CP025408
Alphaproteobacteria
Paracoccus tegillarcae BM15 [CP025408]
2056908
2056983
+
Trp
CCA
-
¡û
>C181190848
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
1147447
1147372
-
Trp
CCA
-
¡û
>C181203387
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
585601
585676
+
Trp
CCA
-
¡û
>C191073591
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
2690502
2690427
-
Trp
CCA
-
¡û
>C191134380
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
2317340
2317415
+
Trp
CCA
-
¡û
>W141558868
JHWH01000007
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
152279
152204
-
Trp
CCA
[ENA]
¡û
>W1910547050
FZNM01000001
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
168542
168617
+
Trp
CCA
[ENA]
¡û
>W1911397930
NWMQ01000038
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
6952
7027
+
Trp
CCA
[ENA]
¡û
>W1810235967
PPGA01000002
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
292942
293017
+
Trp
CCA
[ENA]
¡û
>W1810445012
PZKF01000047
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
16862
16787
-
Trp
CCA
[ENA]
¡û
>W1810543584
QDKM01000002
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
57579
57654
+
Trp
CCA
[ENA]
¡û
>W1810585300
QFCQ01000001
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
3729
3804
+
Trp
CCA
[ENA]
¡û
>W1810685685
QKZL01000028
Alphaproteobacteria
Palleronia aestuarii DSM 22009 [QKZL]
1318
1243
-
Trp
CCA
[ENA]
¡û
>W1810721653
QNSD01000034
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
7298
7373
+
Trp
CCA
[ENA]
¡û
>W1810759466
QPJL01000002
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
21140
21065
-
Trp
CCA
[ENA]
¡û
>W1810762330
QPML01000059
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
4732
4807
+
Trp
CCA
[ENA]
¡û
>W1810862251
QTUJ01000002
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
587331
587406
+
Trp
CCA
[ENA]
¡û
>W1810884875
QUMX01000056
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
5330
5405
+
Trp
CCA
[ENA]
¡û
>C11117048
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
2919112
2919037
-
Trp
CCA
[Ensembl]
¡û
>W1511325042
JQFU01000066
Alphaproteobacteria
Rhodovulum sp. NI22 [JQFU]
806
881
+
Trp
CCA
[ENA]
¡û
>W1511348608
JRKO01000019
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
4792
4867
+
Trp
CCA
[ENA]
¡û
>W1511348666
JRKP01000086
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
1070
995
-
Trp
CCA
[ENA]
¡û
>W1511348680
JRKQ01000010
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
41159
41084
-
Trp
CCA
[ENA]
¡û
>W1511348755
JRKR01000126
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
1022
947
-
Trp
CCA
[ENA]
¡û
>W1511348782
JRKS01000009
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
53977
53902
-
Trp
CCA
[ENA]
¡û
>W1511348819
JRKT01000013
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
41044
40969
-
Trp
CCA
[ENA]
¡û
>C161029307
CP010869
Alphaproteobacteria
Actibacterium sp. EMB200-NS6 [CP010869]
378275
378350
+
Trp
CCA
[Ensembl]
¡û
>W121060012
AJFB01001406
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
228
153
-
Trp
CCA
[ENA]
¡û
>W1610049849
BBFH01000895
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
711
636
-
Trp
CCA
[ENA]
¡û
>W1610081509
BDDO01000043
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
152
227
+
Trp
CCA
[ENA]
¡û
>W1610750127
LNBC01000015
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
73397
73472
+
Trp
CCA
[ENA]
¡û
>W1610946187
LUYN01000014
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
19685
19610
-
Trp
CCA
[ENA]
¡û
>W1710046248
BBFH01000895
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
711
636
-
Trp
CCA
[ENA]
¡û
>W1710080160
BDDO01000043
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
152
227
+
Trp
CCA
[ENA]
¡û
>W1710518481
FNEA01000046
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
19526
19451
-
Trp
CCA
[ENA]
¡û
>W1710528233
FNNA01000012
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
8750
8825
+
Trp
CCA
[ENA]
¡û
>W1710547690
FODE01000015
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
70812
70737
-
Trp
CCA
[ENA]
¡û
>W1710563607
FOPU01000052
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
4924
4999
+
Trp
CCA
[ENA]
¡û
>W1710574702
FOYK01000046
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
4747
4822
+
Trp
CCA
[ENA]
¡û
>W1710581786
FPKI01000065
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
19246
19171
-
Trp
CCA
[ENA]
¡û
>W1710596209
FTMK01000035
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
19755
19680
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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